PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 74605 | ||||||||
Common Name | SELMODRAFT_450985 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | GRAS | ||||||||
Protein Properties | Length: 257aa MW: 29160.2 Da PI: 7.6992 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 159.3 | 3.3e-49 | 33 | 254 | 98 | 318 |
GRAS 98 aNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEa 201 Nq Il+a g++r+Hi+D+++ G+Q lq+La+ p+gpp lRiTg++sp + + + +g L+++A+++g+pf+f++ ++k++e+++ +L ++ +E+ 74605 33 PNQVILNACRGHQRIHIVDYGACFGFQ----LQELANTPGGPPYLRITGIDSPLP-GGGSASDVGCMLREYAQSIGLPFKFRA-MSKKWENIDAATLLLSDDEV 130 6**************************....9********************765.5677899********************.8******************* PP GRAS 202 la...Vnlvlql....hrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvv 298 la Vnl+l+ +lldes es+r+ L+ v+sl+P+v+v ++a++n + F++ fleal +++ lf++++ +es+er+ +E+e g+eivn+v 74605 131 LArnqVNLMLNStlwrTNLLDESILAESPRKVWLNWVWSLNPRVFVQGMNNASYNVPFFMTWFLEALTHFTLLFEAIDCCSQPESKERHLLEQEKNGWEIVNIV 234 99555555554422224677************************************************************9*********************** PP GRAS 299 acegaerrerhetlekWrer 318 ace e++er et ++W++r 74605 235 ACERLEQVERAETHKQWHSR 254 *****************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 27.241 | 1 | 256 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.1E-46 | 33 | 254 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MASSRRCVTR GQPRERCSSR SSTSWNGARS CLPNQVILNA CRGHQRIHIV DYGACFGFQL 60 QELANTPGGP PYLRITGIDS PLPGGGSASD VGCMLREYAQ SIGLPFKFRA MSKKWENIDA 120 ATLLLSDDEV LARNQVNLML NSTLWRTNLL DESILAESPR KVWLNWVWSL NPRVFVQGMN 180 NASYNVPFFM TWFLEALTHF TLLFEAIDCC SQPESKERHL LEQEKNGWEI VNIVACERLE 240 QVERAETHKQ WHSRTQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 3e-21 | 34 | 253 | 98 | 316 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024532571.1 | 1e-144 | scarecrow-like protein 9 | ||||
TrEMBL | D8QPR2 | 0.0 | D8QPR2_SELML; GRAS family protein | ||||
STRING | EFJ38323 | 0.0 | (Selaginella moellendorffii) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 3e-49 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | 74605 |
Entrez Gene | 9663107 |
Publications ? help Back to Top | |||
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