PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

74492

Common Name

SELMODRAFT_449741

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 424aa MW: 47872.8 Da PI: 6.783

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
74492	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	338.7	1e-103	52	419	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104 lve+L+ecA+avss+d +a+ l+++++ +sp g+++qR++ yf+eAL ar++ ++++l+ a+ + + l+++++ e sP+l + ++ Nq Il+ 74492 52 LVEQLVECARAVSSHDVMRANLLVEEIRSKVSPLGTSTQRIVYYFVEALVARVSATGNGLFTAMCHARPT---AGAMLKSVEYIMERSPFLSVRYFFPNQVILN 152 689********************************************************999665555...68899999******************* PP GRAS 105 avegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvl 208 a g++r+Hi+D+++ G+QWpaL+q+La+ p+gpp lRiTg++sp + + + +g L+++A+++g+pf+f++ v+k++e+++ +L ++ +E+laVn+++ 74492 153 ACRGHQRIHIVDYGACFGFQWPALMQELANTPGGPPYLRITGIDSPLP-GGGSASDVGCMLREYAQSIGLPFKFRA-VSKKWENIDAATLLLSDDEVLAVNCMF 254 *****************************************765.5677899****************.7********************** PP GRAS 209 qlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetl 312 + +lldesv es+r+ L+ v+sl+P+v++ ++a++n + F++rfleal +++ lfd+++ +es+er+ +E+e greivn+vaceg er+er et+ 74492 255 RQTNLLDESVLAESPRKMWLNRVRSLNPRVFIQGMNNASYNVPFFMTRFLEALTHFALLFDAIDCCSQPESKERHLLEQEKYGREIVNIVACEGLERVERAETY 358 **************************************************************9********************************* PP GRAS 313 ekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++W++r ++a F+ +++s+++ + ++l+ ++++ ++++ ++g+l+lgWk++ L ++S Wr 74492 359 KQWHSRTQRAKFELLNISDQVFHDTESLMGMYHQS-FELHRDQGWLLLGWKGQILHAFSGWR 419 *****************************55.***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	56.292	26	400	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.4E-101	52	419	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MIDSPVGLQW PKPSPKYQHE EDLQQQPPSL LATGKGTYYQ VLESVGLPSL DLVEQLVECA 60 RAVSSHDVMR ANLLVEEIRS KVSPLGTSTQ RIVYYFVEAL VARVSATGNG LFTAMCHARP 120 TAGAMLKSVE YIMERSPFLS VRYFFPNQVI LNACRGHQRI HIVDYGACFG FQWPALMQEL 180 ANTPGGPPYL RITGIDSPLP GGGSASDVGC MLREYAQSIG LPFKFRAVSK KWENIDAATL 240 LLSDDEVLAV NCMFRQTNLL DESVLAESPR KMWLNRVRSL NPRVFIQGMN NASYNVPFFM 300 TRFLEALTHF ALLFDAIDCC SQPESKERHL LEQEKYGREI VNIVACEGLE RVERAETYKQ 360 WHSRTQRAKF ELLNISDQVF HDTESLMGMY HQSFELHRDQ GWLLLGWKGQ ILHAFSGWRP 420 SSS*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MIDSPVGLQW PKPSPKYQHE EDLQQQPPSL LATGKGTYYQ VLESVGLPSL DLVEQLVECA  60
RAVSSHDVMR ANLLVEEIRS KVSPLGTSTQ RIVYYFVEAL VARVSATGNG LFTAMCHARP  120
TAGAMLKSVE YIMERSPFLS VRYFFPNQVI LNACRGHQRI HIVDYGACFG FQWPALMQEL  180
ANTPGGPPYL RITGIDSPLP GGGSASDVGC MLREYAQSIG LPFKFRAVSK KWENIDAATL  240
LLSDDEVLAV NCMFRQTNLL DESVLAESPR KMWLNRVRSL NPRVFIQGMN NASYNVPFFM  300
TRFLEALTHF ALLFDAIDCC SQPESKERHL LEQEKYGREI VNIVACEGLE RVERAETYKQ  360
WHSRTQRAKF ELLNISDQVF HDTESLMGMY HQSFELHRDQ GWLLLGWKGQ ILHAFSGWRP  420
SSS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-52	58	422	25	382	Protein SCARECROW
5b3h_A	1e-52	58	422	24	381	Protein SCARECROW
5b3h_D	1e-52	58	422	24	381	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024525989.1	0.0	scarecrow-like protein 14
TrEMBL	D8QPQ8	0.0	D8QPQ8_SELML; GRAS family protein
STRING	EFJ38322	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP266	15	129

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-101	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	74492
Entrez Gene	9633306

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]