PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 74001 | ||||||||
Common Name | SELMODRAFT_74001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | NAC | ||||||||
Protein Properties | Length: 146aa MW: 16763.3 Da PI: 9.1884 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 154.5 | 4.7e-48 | 4 | 134 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100 pGfrF+Pt+ elv +yL+k +e+k+l + e i+ +d++k++Pw+Lp ++ +++ewyfF++r++ky++g+r+nr+t sgyWkatg+dk+v++k +++ + 74001 4 LPGFRFSPTEYELVGYYLRKLAEEKELGV-ELIAVIDLVKHDPWELPGlaisLAHMGDTEWYFFVPRQHKYPNGSRPNRVTPSGYWKATGTDKPVMDKeNNTSI 106 59************************999.89***************445654455899**************************************967778* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 gl+ktLvfykg+apkgekt W+m eyrl 74001 107 GLRKTLVFYKGKAPKGEKTPWIMSEYRL 134 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.4E-51 | 3 | 140 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.764 | 3 | 145 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.9E-25 | 5 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MEKLPGFRFS PTEYELVGYY LRKLAEEKEL GVELIAVIDL VKHDPWELPG LAISLAHMGD 60 TEWYFFVPRQ HKYPNGSRPN RVTPSGYWKA TGTDKPVMDK ENNTSIGLRK TLVFYKGKAP 120 KGEKTPWIMS EYRLPDEQNA QFKVL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 9e-46 | 5 | 144 | 19 | 154 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 9e-46 | 5 | 144 | 19 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 9e-46 | 5 | 144 | 19 | 154 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 9e-46 | 5 | 144 | 19 | 154 | NO APICAL MERISTEM PROTEIN |
3swm_A | 8e-46 | 5 | 144 | 22 | 157 | NAC domain-containing protein 19 |
3swm_B | 8e-46 | 5 | 144 | 22 | 157 | NAC domain-containing protein 19 |
3swm_C | 8e-46 | 5 | 144 | 22 | 157 | NAC domain-containing protein 19 |
3swm_D | 8e-46 | 5 | 144 | 22 | 157 | NAC domain-containing protein 19 |
3swp_A | 8e-46 | 5 | 144 | 22 | 157 | NAC domain-containing protein 19 |
3swp_B | 8e-46 | 5 | 144 | 22 | 157 | NAC domain-containing protein 19 |
3swp_C | 8e-46 | 5 | 144 | 22 | 157 | NAC domain-containing protein 19 |
3swp_D | 8e-46 | 5 | 144 | 22 | 157 | NAC domain-containing protein 19 |
4dul_A | 9e-46 | 5 | 144 | 19 | 154 | NAC domain-containing protein 19 |
4dul_B | 9e-46 | 5 | 144 | 19 | 154 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002960840.2 | 1e-103 | NAC domain-containing protein 35 | ||||
Swissprot | Q9ZVP8 | 7e-52 | NAC35_ARATH; NAC domain-containing protein 35 | ||||
TrEMBL | D8QQ10 | 1e-103 | D8QQ10_SELML; Uncharacterized protein | ||||
STRING | EFJ38379 | 1e-104 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02450.1 | 2e-54 | NAC domain containing protein 35 |
Link Out ? help Back to Top | |
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Phytozome | 74001 |
Entrez Gene | 9663151 |
Publications ? help Back to Top | |||
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