PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 74001
Common NameSELMODRAFT_74001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family NAC
Protein Properties Length: 146aa    MW: 16763.3 Da    PI: 9.1884
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
74001genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.54.7e-4841342128
    NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100
             pGfrF+Pt+ elv +yL+k +e+k+l + e i+ +d++k++Pw+Lp      ++ +++ewyfF++r++ky++g+r+nr+t sgyWkatg+dk+v++k +++ +
  74001   4 LPGFRFSPTEYELVGYYLRKLAEEKELGV-ELIAVIDLVKHDPWELPGlaisLAHMGDTEWYFFVPRQHKYPNGSRPNRVTPSGYWKATGTDKPVMDKeNNTSI 106
            59************************999.89***************445654455899**************************************967778* PP

    NAM 101 glkktLvfykgrapkgektdWvmheyrl 128
            gl+ktLvfykg+apkgekt W+m eyrl
  74001 107 GLRKTLVFYKGKAPKGEKTPWIMSEYRL 134
            **************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.4E-513140IPR003441NAC domain
PROSITE profilePS5100548.7643145IPR003441NAC domain
PfamPF023659.9E-255134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MEKLPGFRFS PTEYELVGYY LRKLAEEKEL GVELIAVIDL VKHDPWELPG LAISLAHMGD  60
TEWYFFVPRQ HKYPNGSRPN RVTPSGYWKA TGTDKPVMDK ENNTSIGLRK TLVFYKGKAP  120
KGEKTPWIMS EYRLPDEQNA QFKVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-46514419154NO APICAL MERISTEM PROTEIN
1ut4_B9e-46514419154NO APICAL MERISTEM PROTEIN
1ut7_A9e-46514419154NO APICAL MERISTEM PROTEIN
1ut7_B9e-46514419154NO APICAL MERISTEM PROTEIN
3swm_A8e-46514422157NAC domain-containing protein 19
3swm_B8e-46514422157NAC domain-containing protein 19
3swm_C8e-46514422157NAC domain-containing protein 19
3swm_D8e-46514422157NAC domain-containing protein 19
3swp_A8e-46514422157NAC domain-containing protein 19
3swp_B8e-46514422157NAC domain-containing protein 19
3swp_C8e-46514422157NAC domain-containing protein 19
3swp_D8e-46514422157NAC domain-containing protein 19
4dul_A9e-46514419154NAC domain-containing protein 19
4dul_B9e-46514419154NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269|PubMed:17653269}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269|PubMed:17653269}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002960840.21e-103NAC domain-containing protein 35
SwissprotQ9ZVP87e-52NAC35_ARATH; NAC domain-containing protein 35
TrEMBLD8QQ101e-103D8QQ10_SELML; Uncharacterized protein
STRINGEFJ383791e-104(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02450.12e-54NAC domain containing protein 35
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Okajima K
    Molecular mechanism of phototropin light signaling.
    J. Plant Res., 2016. 129(2): p. 149-57
    [PMID:26815763]
  4. Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M
    Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii.
    J Phys Chem B, 2018. 122(6): p. 1801-1815
    [PMID:29355019]