PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 73360
Common NameGL3-1, SELMODRAFT_73360
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family bHLH
Protein Properties Length: 394aa    MW: 44574 Da    PI: 8.9198
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
73360genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.14.9e-16225272355
            HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
    HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
            +ah + ErrRR+++N++f  Lr ++P       +K++K++iL  A+eY+++Lq
  73360 225 TAHAMLERRRREKLNDRFLMLRNMVPFV-----TKMDKVSILGDAIEYLRQLQ 272
            69*************************8.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-469176IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.355222271IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-19222283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.5E-20225283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-13225272IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.12E-16225276No hitNo description
SMARTSM003538.8E-19228277IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010026Biological Processtrichome differentiation
GO:0010214Biological Processseed coat development
GO:2000029Biological Processregulation of proanthocyanidin biosynthetic process
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MGEKSRITLR QRLQAAVQSI QWTYAVFWKP CPPPQGELVW SDGYYNGSVK TRKTIIVSRE  60
RSPEEHGLQR SDQLRELFEN LSASGDGSQS STATRRPTAA LSPEDLTDTE WFYLVCMSCT  120
FDPGTGIPGQ AFSKGRPVWL CKANEATTKV FSRALLAKTV VCIPMAEGVL ELGSTELSWK  180
EFQRQASISS SQVKSQCQAM LKNVLFRVPH IQSKSVSRKE DDVNTAHAML ERRRREKLND  240
RFLMLRNMVP FVTKMDKVSI LGDAIEYLRQ LQRQVADLEQ RNKPEDSFPM STTYKLGPDS  300
SSYKAEIQMQ DDFTALEIEC SFRQGILLDI LAALDKLNLD VSTVEARTPD QRTFCASLKA  360
EVSLQAFKVF SFTTPMVSLF YRRKICREQA SKI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A1e-2181778177Transcription factor MYC3
4rqw_B1e-2181778177Transcription factor MYC3
4rru_A1e-21817747216Transcription factor MYC3
4rs9_A1e-2181778177Transcription factor MYC3
4ywc_A1e-21817747216Transcription factor MYC3
4ywc_B1e-21817747216Transcription factor MYC3
4yz6_A1e-2181778177Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1230235ERRRRE
2231236RRRREK
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the control of flavonoid pigmentation. {ECO:0000269|PubMed:20949001}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024530380.11e-124basic helix-loop-helix protein A
RefseqXP_024530386.11e-124basic helix-loop-helix protein A
SwissprotE3SXU44e-58BHLHW_PEA; Basic helix-loop-helix protein A
TrEMBLD8QQZ90.0D8QQZ9_SELML; Uncharacterized protein GL3-1
STRINGEFJ385340.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP24471429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09820.14e-55bHLH family protein
Publications ? help Back to Top
  1. Hellens RP, et al.
    Identification of Mendel's white flower character.
    PLoS ONE, 2010. 5(10): p. e13230
    [PMID:20949001]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]