PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 73221 | ||||||||
Common Name | SELMODRAFT_73221, SELMODRAFT_73222, WRKY_18, WRKY_9 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | WRKY | ||||||||
Protein Properties | Length: 59aa MW: 6834.07 Da PI: 11.1182 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 62 | 1e-19 | 25 | 59 | 3 | 36 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EE CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkk 36 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k 73221 25 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARK 59 99***********************9988****98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.1E-8 | 2 | 20 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.7E-21 | 11 | 59 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 20.461 | 18 | 59 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.62E-17 | 21 | 59 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-8 | 23 | 59 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.8E-16 | 25 | 59 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 59 aa Download sequence Send to blast |
SRKLRLKRTI KVPAISNKMA EIPPDDYSWR KYGQKPIKGS PHPRGYYKCS SMRGCPARK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002970266.2 | 2e-34 | WRKY transcription factor WRKY51 | ||||
Refseq | XP_002978424.2 | 2e-34 | WRKY transcription factor WRKY51 | ||||
Swissprot | Q93WU6 | 3e-32 | WRK74_ARATH; Probable WRKY transcription factor 74 | ||||
Swissprot | Q9SR07 | 2e-32 | WRK39_ARATH; Probable WRKY transcription factor 39 | ||||
TrEMBL | D8RGP1 | 7e-35 | D8RGP1_SELML; Uncharacterized protein WRKY_18 (Fragment) | ||||
STRING | EFJ20410 | 1e-35 | (Selaginella moellendorffii) | ||||
STRING | EFJ28396 | 1e-35 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04670.1 | 1e-34 | WRKY DNA-binding protein 39 |
Link Out ? help Back to Top | |
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Phytozome | 73221 |
Entrez Gene | 9646647 | 9653547 |
Publications ? help Back to Top | |||
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