PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 73177 | ||||||||
Common Name | SELMODRAFT_73174, SELMODRAFT_73177 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 57aa MW: 6622.63 Da PI: 11.5261 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 70.5 | 3e-22 | 1 | 49 | 3 | 55 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++GVr+++ +g+W+AeIrdp+ + +r++lg+++t+e+Aa+a++ a+++++g 73177 1 FRGVRRRP-WGKWAAEIRDPK----KaARVWLGTYDTPEDAARAYDMAALRFRG 49 79******.**********94....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.81E-27 | 1 | 57 | No hit | No description |
SuperFamily | SSF54171 | 1.11E-23 | 1 | 57 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.1E-16 | 1 | 49 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.9E-33 | 1 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 1 | 12 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.607 | 1 | 57 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.0E-30 | 1 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.2E-11 | 23 | 39 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 57 aa Download sequence Send to blast |
FRGVRRRPWG KWAAEIRDPK KAARVWLGTY DTPEDAARAY DMAALRFRGS KAKLNFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 2e-23 | 1 | 57 | 6 | 63 | ATERF1 |
3gcc_A | 2e-23 | 1 | 57 | 6 | 63 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Acts as positive regulator of tolerance to waterlogging stress. Delays waterlogging-induced premature senescence by regulating stomatal closure and antioxidant enzyme activity. May function through ABI1-mediated abscisic acid (ABA) signaling pathway (PubMed:22661072). Involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:22661072}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salt stress (PubMed:16133218, PubMed:21069430). Induced drought stress, jasmonate (JA), salicylic acid (SA), abscisic acid (ABA) and ethylene. Down-regulated by freezing stress (PubMed:21069430). Induced by wounding in the flowering stem (PubMed:21911380). Induced by waterlogging. {ECO:0000269|PubMed:16133218, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:21911380}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015073144.1 | 2e-31 | ethylene-responsive transcription factor ERF110-like | ||||
Refseq | XP_024531026.1 | 9e-31 | ethylene-responsive transcription factor ESR2-like | ||||
Swissprot | Q9LYU3 | 1e-27 | EF113_ARATH; Ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | D8RAP4 | 1e-32 | D8RAP4_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ28465 | 2e-33 | (Selaginella moellendorffii) | ||||
STRING | EFJ30353 | 2e-33 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13330.1 | 5e-30 | related to AP2 6l |
Link Out ? help Back to Top | |
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Phytozome | 73177 |
Entrez Gene | 9631186 | 9631774 |