PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 73157 | ||||||||
Common Name | SELMODRAFT_73150, SELMODRAFT_73157 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 57aa MW: 6694.81 Da PI: 11.1944 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 65.2 | 1.3e-20 | 1 | 50 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ykGVr+++ +g+Wv+eIr+p++ r r++lg+f t+e+Aaka++ a +l+g+ 73157 1 YKGVRRRS-WGKWVSEIREPRK---RSRIWLGSFATPEMAAKAYDYAVFCLRGP 50 9****887.**********954...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.14E-27 | 1 | 57 | No hit | No description |
SuperFamily | SSF54171 | 3.53E-22 | 1 | 57 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.8E-30 | 1 | 57 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.3E-14 | 1 | 49 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.314 | 1 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-10 | 1 | 12 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 7.1E-31 | 1 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.3E-10 | 23 | 39 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 57 aa Download sequence Send to blast |
YKGVRRRSWG KWVSEIREPR KRSRIWLGSF ATPEMAAKAY DYAVFCLRGP SAMLNFP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 6e-19 | 1 | 57 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00020 | PBM | Transfer from AT4G36900 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024530345.1 | 2e-35 | ethylene-responsive transcription factor ERF039-like | ||||
Swissprot | O22174 | 2e-27 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
Swissprot | Q9SW63 | 4e-27 | RA210_ARATH; Ethylene-responsive transcription factor RAP2-10 | ||||
TrEMBL | D8RFB8 | 5e-34 | D8RFB8_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ17622 | 9e-35 | (Selaginella moellendorffii) | ||||
STRING | EFJ29088 | 9e-35 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G23340.1 | 8e-30 | DREB and EAR motif protein 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 73157 |
Entrez Gene | 9645347 | 9647408 |
Publications ? help Back to Top | |||
---|---|---|---|
|