PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 73155 | ||||||||
Common Name | SELMODRAFT_73153, SELMODRAFT_73155 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 57aa MW: 6578.64 Da PI: 10.9053 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61 | 2.7e-19 | 1 | 50 | 3 | 56 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 ykGVr ++ +g+Wv eIr+p++ r r++lg++ tae Aa+a++aa +l+g+ 73155 1 YKGVRMRS-WGKWVTEIREPKK---RSRIWLGSYATAEVAARAYDAALMCLRGP 50 9****998.**********965...5*************************995 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.48E-25 | 1 | 57 | No hit | No description |
SuperFamily | SSF54171 | 2.29E-20 | 1 | 57 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.1E-28 | 1 | 57 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.194 | 1 | 57 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.0E-30 | 1 | 57 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-10 | 1 | 12 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.1E-12 | 1 | 49 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.2E-10 | 23 | 39 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0034605 | Biological Process | cellular response to heat | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071497 | Biological Process | cellular response to freezing | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 57 aa Download sequence Send to blast |
YKGVRMRSWG KWVTEIREPK KRSRIWLGSY ATAEVAARAY DAALMCLRGP SAQFNFP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 8e-16 | 1 | 57 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. | |||||
UniProt | Transcriptional activator involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). Involved in salt and osmotic stress response pathways. May be regulated by the stress-related genes RD29A, RD22, DREB1A or P5CS during stress response (PubMed:27137403). Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:21069430, ECO:0000269|PubMed:27137403}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00156 | DAP | Transfer from AT1G21910 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA) and ethylene. Down-regulated by freezing and heat stresses. {ECO:0000269|PubMed:21069430}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024528032.1 | 1e-35 | ethylene-responsive transcription factor ERF017-like | ||||
Refseq | XP_024532118.1 | 1e-35 | ethylene-responsive transcription factor ERF037-like | ||||
Swissprot | O22174 | 3e-27 | ERF08_ARATH; Ethylene-responsive transcription factor ERF008 | ||||
Swissprot | Q9SFE4 | 4e-27 | ERF12_ARATH; Ethylene-responsive transcription factor ERF012 | ||||
TrEMBL | D8QMV0 | 3e-34 | D8QMV0_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ31868 | 5e-35 | (Selaginella moellendorffii) | ||||
STRING | EFJ37990 | 5e-35 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23340.1 | 1e-29 | DREB and EAR motif protein 3 |
Link Out ? help Back to Top | |
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Phytozome | 73155 |
Entrez Gene | 9631723 | 9632263 |