PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 73140 | ||||||||
Common Name | SELMODRAFT_73140, SELMODRAFT_73145 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 61aa MW: 7027.99 Da PI: 11.236 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.9 | 1.4e-19 | 4 | 54 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +grWvAeI+d + ++ r +lg+f tae+Aa+a+++a+ l+g 73140 4 KKFVGVRQRP-SGRWVAEIKDTT---QKIRLWLGTFNTAEDAARAYDEAACLLRG 54 589*******.7*********32...35**********************99998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.28E-28 | 4 | 61 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 7.4E-29 | 5 | 61 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.88E-20 | 5 | 61 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 19.585 | 5 | 61 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-14 | 5 | 54 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-31 | 5 | 61 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-8 | 6 | 17 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.2E-8 | 28 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 61 aa Download sequence Send to blast |
KNRKKFVGVR QRPSGRWVAE IKDTTQKIRL WLGTFNTAED AARAYDEAAC LLRGTNTRTN 60 F |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-15 | 4 | 61 | 1 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 4e-15 | 4 | 61 | 4 | 62 | ATERF1 |
3gcc_A | 4e-15 | 4 | 61 | 4 | 62 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024535923.1 | 1e-36 | uncharacterized protein LOC112348096 | ||||
Refseq | XP_024538052.1 | 8e-37 | ethylene-responsive transcription factor ERF037-like | ||||
Swissprot | Q6J9S1 | 1e-34 | RA211_ARATH; Ethylene-responsive transcription factor RAP2-11 | ||||
TrEMBL | D8RVK1 | 6e-37 | D8RVK1_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ21421 | 1e-37 | (Selaginella moellendorffii) | ||||
STRING | EFJ23787 | 1e-37 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G19790.1 | 6e-27 | related to AP2 11 |
Link Out ? help Back to Top | |
---|---|
Phytozome | 73140 |
Entrez Gene | 9637873 | 9656130 |
Publications ? help Back to Top | |||
---|---|---|---|
|