PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

73138

Common Name

SELMODRAFT_73135, SELMODRAFT_73138

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

ERF

Protein Properties

Length: 62aa MW: 7246.06 Da PI: 10.5281

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
73138	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	70.5	3e-22	5	55	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GVr+++ +g+W+AeIrd + + +r +lg+++taeeAa a+++ ++ l+g 73138 5 SKYRGVRQRP-WGKWAAEIRDpF-----KgTRLWLGTYDTAEEAAIAYDKKARDLRG 55 89******.******55.....45********************99997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00847	7.5E-15	5	55	IPR001471	AP2/ERF domain
CDD	cd00018	3.36E-28	5	62	No hit	No description
SuperFamily	SSF54171	5.75E-24	5	62	IPR016177	DNA-binding domain
SMART	SM00380	3.6E-29	6	62	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	23.011	6	62	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	5.1E-32	6	62	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-12	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.3E-12	29	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 62 aa Download sequence Send to blast
RSQQSKYRGV RQRPWGKWAA EIRDPFKGTR LWLGTYDTAE EAAIAYDKKA RDLRGDNAQT 60 NF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2gcc_A	2e-21	2	62	1	62	ATERF1
3gcc_A	2e-21	2	62	1	62	ATERF1
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Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024532031.1	3e-37	uncharacterized protein DDB_G0271670-like
Swissprot	P93007	8e-26	EF112_ARATH; Ethylene-responsive transcription factor ERF112
TrEMBL	D8QWU4	1e-37	D8QWU4_SELML; Uncharacterized protein (Fragment)
STRING	EFJ27531	2e-38	(Selaginella moellendorffii)
STRING	EFJ35295	2e-38	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33710.1	3e-28	ERF family protein

Link Out ? help Back to Top
Phytozome	73138
Entrez Gene	9640020 \| 9655420

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]