PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 73136 | ||||||||
Common Name | SELMODRAFT_73132, SELMODRAFT_73136 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 62aa MW: 7188.23 Da PI: 10.4627 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.3 | 1e-14 | 5 | 52 | 1 | 53 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpse.ngkrkrfslgkfgtaeeAakaaiaarkkl 53 ++y+GVr ++ g+WvAe ++ +g +r +lg+f ++e Aa a+++a + 73136 5 KKYRGVRLRS-FGKWVAE---FCRpDG--QRLWLGTFHSPESAAMAYDQALVES 52 69*****999.9******...766665..********************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.56E-18 | 5 | 62 | No hit | No description |
SMART | SM00380 | 4.0E-17 | 6 | 62 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.518 | 6 | 62 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.8E-23 | 6 | 62 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-11 | 6 | 48 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-17 | 6 | 62 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 4.4E-8 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.4E-8 | 28 | 44 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 62 aa Download sequence Send to blast |
RSKEKKYRGV RLRSFGKWVA EFCRPDGQRL WLGTFHSPES AAMAYDQALV ESHGPLHKLN 60 FP |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024524498.1 | 1e-39 | ethylene-responsive transcription factor ERF026-like | ||||
Swissprot | Q9SW63 | 2e-16 | RA210_ARATH; Ethylene-responsive transcription factor RAP2-10 | ||||
TrEMBL | D8QYZ2 | 4e-39 | D8QYZ2_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ31278 | 6e-40 | (Selaginella moellendorffii) | ||||
STRING | EFJ34327 | 6e-40 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36900.1 | 9e-19 | related to AP2 10 |
Link Out ? help Back to Top | |
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Phytozome | 73136 |
Entrez Gene | 9633103 | 9655584 |
Publications ? help Back to Top | |||
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