PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 73113 | ||||||||
Common Name | SELMODRAFT_73113 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | Nin-like | ||||||||
Protein Properties | Length: 59aa MW: 7058.36 Da PI: 10.2841 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 89.7 | 2.3e-28 | 5 | 53 | 4 | 52 |
RWP-RK 4 eisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 +isledls+yF +pi++A++eL+v+lTvLK+ CR++GI+RWPhRk+ksl 73113 5 DISLEDLSRYFTMPITQASNELKVGLTVLKKWCREFGIPRWPHRKLKSL 53 89*********************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 17.803 | 1 | 59 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 4.2E-23 | 6 | 53 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 59 aa Download sequence Send to blast |
ERMMDISLED LSRYFTMPIT QASNELKVGL TVLKKWCREF GIPRWPHRKL KSLESLIHK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024525129.1 | 1e-32 | TPR-containing protein DDB_G0280363-like | ||||
Swissprot | O81791 | 1e-21 | RKD5_ARATH; Protein RKD5 | ||||
TrEMBL | D8RII7 | 5e-36 | D8RII7_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ28257 | 8e-37 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP567 | 17 | 77 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 6e-24 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | 73113 |
Entrez Gene | 9641323 |
Publications ? help Back to Top | |||
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