PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 72871 | ||||||||
Common Name | SELMODRAFT_72871 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 80aa MW: 9004.89 Da PI: 8.4946 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 58.1 | 2.2e-18 | 5 | 55 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 +++ GVr+++ +grWvAeI+d ++ r +lg+++ ae+Aa+a+++a+ l+g 72871 5 KKFVGVRQRS-SGRWVAEIKD----TaQKVRLWLGTYDNAEDAARAYDEAASLLRG 55 589****999.7*********....3346**********************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF038123 | 2.4E-21 | 1 | 78 | IPR017392 | AP2/ERF transcription factor ERF/PTI6 |
CDD | cd00018 | 3.71E-26 | 5 | 65 | No hit | No description |
Pfam | PF00847 | 8.8E-13 | 6 | 55 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 9.8E-28 | 6 | 64 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.19 | 6 | 63 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.68E-19 | 6 | 63 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 1.3E-29 | 6 | 69 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-7 | 7 | 18 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-7 | 29 | 45 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence Send to blast |
SKRRKKFVGV RQRSSGRWVA EIKDTAQKVR LWLGTYDNAE DAARAYDEAA SLLRGADSRT 60 NFASSGTPFS PCQEEELDDH |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in symbiotic nodule signaling in response to rhizobial Nod factors (NFs) (PubMed:17449807, PubMed:17827349). Binds to the GCC-box (NF-responsive box) of ENOD11 promoter. Acts as transcriptional activator of NF-responsive box-containing target gene promoters in root hairs (PubMed:17827349). Functions as a transcriptional regulator required for root infection by symbiotic rhizobia, infection thread (IT) formation and maintenance, and nodule development. Necessary for NF-induced gene expression and spontaneous nodulation activated by CCAMK. Functions downstream of CCAMK to activate nodulation gene expression (PubMed:17449807). Involved in early stages of root nodule development. Functions redundantly with ERN2. Is essential with ERN2 for the initiation of root hair infection, and nodule organogenesis and development. Required for accurate expression of the NF signaling genes ENOD11 and ENOD12 (PubMed:23077241, PubMed:27208242). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349, ECO:0000269|PubMed:23077241, ECO:0000269|PubMed:27208242}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced in roots from 1 to 21 day after inoculation with Sinorhizobium meliloti (PubMed:17449807). Induced by Nod factors in root hairs (PubMed:17827349). {ECO:0000269|PubMed:17449807, ECO:0000269|PubMed:17827349}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024527419.1 | 2e-51 | ethylene-responsive transcription factor RAP2-11-like | ||||
Swissprot | A2Q5W1 | 3e-28 | ERN1_MEDTR; Ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | D8R8K8 | 7e-52 | D8R8K8_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ32080 | 1e-52 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 9e-20 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | 72871 |
Entrez Gene | 9635793 |
Publications ? help Back to Top | |||
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