PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 72709 | ||||||||
Common Name | SELMODRAFT_72709, SELMODRAFT_72711 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | LSD | ||||||||
Protein Properties | Length: 112aa MW: 11674.7 Da PI: 7.9189 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 38.6 | 1.7e-12 | 8 | 30 | 1 | 23 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCd 23 C+gCrtlL YP GA++VRCalC 72709 8 CSGCRTLLIYPHGATNVRCALCS 30 **********************6 PP | |||||||
2 | zf-LSD1 | 44.7 | 2.2e-14 | 47 | 71 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL Y rGA+sV+C++C+tV 72709 47 CGGCRTLLLYIRGATSVQCSCCHTV 71 ************************9 PP | |||||||
3 | zf-LSD1 | 36.5 | 7.8e-12 | 85 | 108 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24 CggC t+L Y +GA sV+CalC+ 72709 85 CGGCSTTLVYAFGAQSVKCALCQY 108 **********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 8.6E-14 | 5 | 33 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.8E-11 | 8 | 30 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 5.0E-15 | 44 | 72 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 5.1E-12 | 47 | 71 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.8E-11 | 82 | 110 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 7.6E-11 | 85 | 109 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 112 aa Download sequence Send to blast |
GAQSQLICSG CRTLLIYPHG ATNVRCALCS CITPVSPQGP EMAQLVCGGC RTLLLYIRGA 60 TSVQCSCCHT VNVAMDANQI AHVNCGGCST TLVYAFGAQS VKCALCQYIT PI |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of programmed cell death and hypersensitive response (HR). Positive regulator of callus differentiation. {ECO:0000269|PubMed:15915636}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By light. Down-regulated by dark. {ECO:0000269|PubMed:15915636}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002968020.2 | 3e-75 | protein LSD1 isoform X2 | ||||
Refseq | XP_002992422.2 | 3e-75 | protein LSD1 isoform X2 | ||||
Swissprot | Q0J7V9 | 3e-52 | LSD1_ORYSJ; Protein LSD1 | ||||
TrEMBL | D8R978 | 9e-74 | D8R978_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ06572 | 1e-74 | (Selaginella moellendorffii) | ||||
STRING | EFJ31367 | 1e-74 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP1146 | 17 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.1 | 1e-53 | lsd one like 1 |
Link Out ? help Back to Top | |
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Phytozome | 72709 |
Entrez Gene | 9633344 | 9661567 |
Publications ? help Back to Top | |||
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