PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 72702 | ||||||||
Common Name | SELMODRAFT_72702, SELMODRAFT_72704 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | bHLH | ||||||||
Protein Properties | Length: 102aa MW: 11642.4 Da PI: 9.6846 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 31 | 4.5e-10 | 26 | 73 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq 72702 26 SHSLAERVRREKISERMKFLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 73 8*************************9....556*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 2.62E-18 | 19 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.01E-10 | 20 | 77 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.9E-18 | 22 | 89 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.669 | 22 | 72 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 3.4E-7 | 26 | 73 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 7.7E-10 | 28 | 78 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
ENSKPPEPPK QDYIHVRARR GQATDSHSLA ERVRREKISE RMKFLQDLVP GCSKVTGKAV 60 MLDEIINYVQ SLQRQVEFLS MKLAAVNPRL DINLDGLLTK EV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. {ECO:0000269|PubMed:23161888}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002966517.2 | 3e-67 | transcription factor bHLH49 isoform X1 | ||||
Refseq | XP_002982358.2 | 3e-67 | transcription factor bHLH49 isoform X1 | ||||
Refseq | XP_024526894.1 | 3e-67 | transcription factor bHLH49 isoform X2 | ||||
Refseq | XP_024543148.1 | 3e-67 | transcription factor bHLH49 isoform X2 | ||||
Swissprot | Q9CAA9 | 1e-54 | BH049_ARATH; Transcription factor bHLH49 | ||||
TrEMBL | D8R5U8 | 4e-69 | D8R5U8_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ16603 | 7e-70 | (Selaginella moellendorffii) | ||||
STRING | EFJ32544 | 7e-70 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP58 | 16 | 313 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.3 | 4e-57 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | 72702 |
Entrez Gene | 9635964 | 9652313 |
Publications ? help Back to Top | |||
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