PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 71661 | ||||||||
Common Name | CBF2, SELMODRAFT_71661 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 153aa MW: 17571.8 Da PI: 6.3539 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 62.3 | 1.1e-19 | 3 | 54 | 1 | 56 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 + y GVr+++ +g+Wv+eIr+p++ + r++lg+f t+e+Aa+a++ a+++l+ge 71661 3 PVYIGVRRRS-WGKWVSEIREPKK---KNRIWLGSFPTPEMAARAHDVAALCLRGE 54 6799***887.**********854...59*************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.8E-13 | 3 | 54 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.037 | 4 | 61 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.7E-35 | 4 | 67 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.37E-22 | 4 | 63 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.1E-31 | 4 | 63 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.0E-8 | 5 | 16 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.11E-34 | 5 | 63 | No hit | No description |
PRINTS | PR00367 | 1.0E-8 | 27 | 43 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
RHPVYIGVRR RSWGKWVSEI REPKKKNRIW LGSFPTPEMA ARAHDVAALC LRGEDAHLNF 60 PDSVHTLPRP ERLSPKCIQE AATSAAMSFQ DRLLPYTAPQ QQQQEQEEQP DQTERHEEQQ 120 NSQQPAKYVD EDFIFNMPTI LSSMAEALAV PLP |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 7e-17 | 2 | 61 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00557 | DAP | Transfer from AT5G51990 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024521212.1 | 3e-80 | ethylene-responsive transcription factor ABR1-like | ||||
Swissprot | Q9FJ93 | 8e-42 | DRE1D_ARATH; Dehydration-responsive element-binding protein 1D | ||||
TrEMBL | D8T633 | 1e-110 | D8T633_SELML; Uncharacterized protein CBF2 (Fragment) | ||||
STRING | EFJ07906 | 1e-111 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G51990.1 | 2e-43 | C-repeat-binding factor 4 |
Link Out ? help Back to Top | |
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Phytozome | 71661 |
Entrez Gene | 9633762 |