PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 71469 | ||||||||
Common Name | SELMODRAFT_57828, SELMODRAFT_71469 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | NAC | ||||||||
Protein Properties | Length: 128aa MW: 14892.1 Da PI: 10.2047 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 157.5 | 5.4e-49 | 1 | 128 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglk 103 pGfrFhPtdeel+++yL++kve+k+l + evi+++diyk++Pw+Lp +++ +e+ yfF++rd+ky++++r+nr+t+ g+Wkatg+d+ v+s+ +++ +glk 71469 1 PGFRFHPTDEELLTFYLHRKVEHKPLAI-EVITQLDIYKFDPWELPaSSTGCGEQASYFFCPRDRKYRNSSRPNRVTSGGFWKATGTDRVVHSAkpGHKCIGLK 103 8*************************99.99***************44555688899***********************************98878888**** PP NAM 104 ktLvfykgrapkgektdWvmheyrl 128 k+Lvfykgra +++ktdW+mhe+r+ 71469 104 KSLVFYKGRAARPVKTDWMMHEFRM 128 ***********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-51 | 1 | 128 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.8E-26 | 1 | 128 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 50.636 | 1 | 128 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 128 aa Download sequence Send to blast |
PGFRFHPTDE ELLTFYLHRK VEHKPLAIEV ITQLDIYKFD PWELPASSTG CGEQASYFFC 60 PRDRKYRNSS RPNRVTSGGF WKATGTDRVV HSAKPGHKCI GLKKSLVFYK GRAARPVKTD 120 WMMHEFRM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-45 | 1 | 128 | 17 | 140 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269|PubMed:19081078}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269|PubMed:19081078}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024531169.1 | 7e-91 | protein FEZ isoform X2 | ||||
Refseq | XP_024539265.1 | 8e-91 | protein FEZ isoform X2 | ||||
Swissprot | Q9ZVH0 | 1e-65 | FEZ_ARATH; Protein FEZ | ||||
TrEMBL | D8RHM7 | 4e-92 | D8RHM7_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ20332 | 7e-93 | (Selaginella moellendorffii) | ||||
STRING | EFJ28309 | 7e-93 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26870.1 | 7e-68 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | 71469 |
Entrez Gene | 9646429 | 9653437 |
Publications ? help Back to Top | |||
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