PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 71417 | ||||||||
Common Name | SELMODRAFT_71417 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | NAC | ||||||||
Protein Properties | Length: 179aa MW: 20973.1 Da PI: 10.4344 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 153.4 | 1e-47 | 1 | 125 | 4 | 128 |
NAM 4 GfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktL 106 GfrFhPtdeelv +yL++k+++k +++ +vi+ +diy+++Pw+Lpk +e+ wyfF+ rd+k +++ r+nr+tksg+Wkatg d+++ + +++ vglkktL 71417 1 GFRFHPTDEELVGFYLRRKIQDKAFPF-QVITPLDIYNYDPWELPKLSVCGENAWYFFCLRDHKFRNSLRPNRITKSGFWKATGPDRPISTVeTSSCVGLKKTL 103 9**************************.99***************75556899************************************98756777******* PP NAM 107 vfykgrapkgektdWvmheyrl 128 vfykgra k++kt+Wvmhe+rl 71417 104 VFYKGRATKATKTEWVMHEFRL 125 ********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 51.591 | 1 | 168 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 4.05E-51 | 1 | 168 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.7E-27 | 1 | 125 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
GFRFHPTDEE LVGFYLRRKI QDKAFPFQVI TPLDIYNYDP WELPKLSVCG ENAWYFFCLR 60 DHKFRNSLRP NRITKSGFWK ATGPDRPIST VETSSCVGLK KTLVFYKGRA TKATKTEWVM 120 HEFRLPTIGS SAQGSCEVRK KSFFSLILPR NDFSVQQESW SVCRIFRKRW SPRKNSASD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-45 | 1 | 174 | 20 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-45 | 1 | 174 | 20 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-45 | 1 | 174 | 20 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-45 | 1 | 174 | 20 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-45 | 1 | 174 | 23 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-45 | 1 | 174 | 23 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-45 | 1 | 174 | 23 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-45 | 1 | 174 | 23 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-45 | 1 | 174 | 23 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-45 | 1 | 174 | 23 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-45 | 1 | 174 | 23 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-45 | 1 | 174 | 23 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-45 | 1 | 174 | 20 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-45 | 1 | 174 | 20 | 171 | NAC domain-containing protein 19 |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002961966.2 | 1e-114 | putative NAC domain-containing protein 94 isoform X1 | ||||
Swissprot | Q9FIW5 | 8e-68 | NAC94_ARATH; Putative NAC domain-containing protein 94 | ||||
TrEMBL | D8QRD1 | 1e-130 | D8QRD1_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ37226 | 1e-131 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G39820.1 | 3e-70 | NAC domain containing protein 94 |
Link Out ? help Back to Top | |
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Phytozome | 71417 |
Entrez Gene | 9657244 |
Publications ? help Back to Top | |||
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