PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

71404

Common Name

SELMODRAFT_71405, VND1-2

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NAC

Protein Properties

Length: 156aa MW: 18406.8 Da PI: 8.6204

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
71404	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.3	5e-56	3	131	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102 +ppGfrFhPtdeelv +yL kkv+++ ++l ++i+++d+yk+ePwdL++ + +a+++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk++++ k +l+g+ 71404 3 VPPGFRFHPTDEELVGYYLYKKVSSEAIDL-DIIRDIDLYKMEPWDLQEdcASSADQSEWYFFSHKDKKYPTGSRTNRATTAGFWKATGRDKAIHT-KFKLIGM 104 69**************************.99**********95334444667*********************************9.899 PP NAM 103 kktLvfykgrapkgektdWvmheyrle 129 +ktLvfykgrap+g+ktdW+mheyrle 71404 105 RKTLVFYKGRAPNGQKTDWIMHEYRLE 131 ***********************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	58.702	3	155	IPR003441	NAC domain
SuperFamily	SSF101941	1.96E-59	3	155	IPR003441	NAC domain
Pfam	PF02365	5.3E-30	4	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
SHVPPGFRFH PTDEELVGYY LYKKVSSEAI DLDIIRDIDL YKMEPWDLQE DCASSADQSE 60 WYFFSHKDKK YPTGSRTNRA TTAGFWKATG RDKAIHTKFK LIGMRKTLVF YKGRAPNGQK 120 TDWIMHEYRL EDEQSGSYPN FSQEEGWVVC RMFKKR

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-52	2	156	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024520356.1	1e-99	NAC domain-containing protein 76
Swissprot	Q9FWX2	3e-85	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	D8T5C3	1e-114	D8T5C3_SELML; Uncharacterized protein VND1-2 (Fragment)
STRING	EFJ08057	1e-115	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-79	NAC 007

Link Out ? help Back to Top
Phytozome	71404
Entrez Gene	9658547

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]