PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 71307
Common NameSELMODRAFT_86855
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family NAC
Protein Properties Length: 160aa    MW: 18668.6 Da    PI: 10.5385
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
71307genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM174.72.7e-5431311128
    NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglk 103
            lppGfrFhPtdeelvv+yL +k+++++++   +++evd+yk++Pw+Lp++++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk ++s+ +g+++g+k
  71307   3 LPPGFRFHPTDEELVVHYLSRKLASHSFKPLPIVTEVDLYKFDPWELPQQASFGEKEWYFFSPRDRKYPNGVRPNRAAASGYWKATGTDKMIHSSaDGRKIGVK 106
            79*************************999899***************998999***************************************9989999**** PP

    NAM 104 ktLvfykgrapkgektdWvmheyrl 128
            k Lvfykgrapkg+k++W+mheyrl
  71307 107 KALVFYKGRAPKGVKSNWIMHEYRL 131
            ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-642160IPR003441NAC domain
PROSITE profilePS5100562.5193160IPR003441NAC domain
PfamPF023651.2E-284131IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009753Biological Processresponse to jasmonic acid
GO:0045995Biological Processregulation of embryonic development
GO:0048317Biological Processseed morphogenesis
GO:0080060Biological Processintegument development
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 160 aa     Download sequence    Send to blast
LQLPPGFRFH PTDEELVVHY LSRKLASHSF KPLPIVTEVD LYKFDPWELP QQASFGEKEW  60
YFFSPRDRKY PNGVRPNRAA ASGYWKATGT DKMIHSSADG RKIGVKKALV FYKGRAPKGV  120
KSNWIMHEYR LVDPNNKALF ARKRGSLRLD DWVLCRIYKK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-80116018168NAC domain-containing protein 19
3swm_B7e-80116018168NAC domain-containing protein 19
3swm_C7e-80116018168NAC domain-containing protein 19
3swm_D7e-80116018168NAC domain-containing protein 19
3swp_A7e-80116018168NAC domain-containing protein 19
3swp_B7e-80116018168NAC domain-containing protein 19
3swp_C7e-80116018168NAC domain-containing protein 19
3swp_D7e-80116018168NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family associated with the grain protein content (GPC). Accelerates senescence and increases nutrient remobilization from leaves to developing grains. The tetraploid cultivated wheat (T.durum) contains one additional gene coding for a functional protein (NAM-A1) and one extra pseudogene (NAM-B1) (PubMed:17124321). Plays a weaker role in terminal senescence than NAM-A1. {ECO:0000269|PubMed:17124321, ECO:0000269|PubMed:22278768}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00361DAPTransfer from AT3G15510Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002960864.21e-117NAC domain-containing protein 72
SwissprotA0SPJ64e-81NAMB2_TRITD; NAC transcription factor NAM-B2
TrEMBLD8R8S31e-115D8R8S3_SELML; Uncharacterized protein (Fragment)
STRINGEFJ317481e-116(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15500.15e-82NAC domain containing protein 3
Publications ? help Back to Top
  1. Uauy C,Distelfeld A,Fahima T,Blechl A,Dubcovsky J
    A NAC Gene regulating senescence improves grain protein, zinc, and iron content in wheat.
    Science, 2006. 314(5803): p. 1298-301
    [PMID:17124321]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]