PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 71305 | ||||||||
Common Name | SELMODRAFT_71305 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | NAC | ||||||||
Protein Properties | Length: 154aa MW: 17976.5 Da PI: 10.1255 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.1 | 1.8e-45 | 1 | 124 | 3 | 128 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktL 106 pGfrF+Pt+eelv++yL+ kv+gk + vi +vd y+++Pw+L + +++k yfF++rd+ky+ g+r++r+++sgyWkatg+d++v + +g+ +g kktL 71305 1 PGFRFNPTEEELVSFYLECKVRGKLNLPPGVILDVDFYHHDPWELS-GI-SNTKVFYFFVPRDRKYPDGSRPRRVARSGYWKATGTDHKVSDFRGKCIGKKKTL 102 8**********************99666689**************8.44.345788************************************************ PP NAM 107 vfykgrapkgektdWvmheyrl 128 vfy+grapkg+kt+Wvm+e+rl 71305 103 VFYQGRAPKGNKTNWVMNEFRL 124 ********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-50 | 1 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-24 | 1 | 124 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 49.97 | 1 | 147 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
PGFRFNPTEE ELVSFYLECK VRGKLNLPPG VILDVDFYHH DPWELSGISN TKVFYFFVPR 60 DRKYPDGSRP RRVARSGYWK ATGTDHKVSD FRGKCIGKKK TLVFYQGRAP KGNKTNWVMN 120 EFRLPWTDQP NSIAKEFDVT LCRMYQKSSS SQLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-47 | 1 | 152 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-47 | 1 | 152 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-47 | 1 | 152 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-47 | 1 | 152 | 19 | 170 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-47 | 1 | 152 | 22 | 173 | NAC domain-containing protein 19 |
3swm_B | 4e-47 | 1 | 152 | 22 | 173 | NAC domain-containing protein 19 |
3swm_C | 4e-47 | 1 | 152 | 22 | 173 | NAC domain-containing protein 19 |
3swm_D | 4e-47 | 1 | 152 | 22 | 173 | NAC domain-containing protein 19 |
3swp_A | 4e-47 | 1 | 152 | 22 | 173 | NAC domain-containing protein 19 |
3swp_B | 4e-47 | 1 | 152 | 22 | 173 | NAC domain-containing protein 19 |
3swp_C | 4e-47 | 1 | 152 | 22 | 173 | NAC domain-containing protein 19 |
3swp_D | 4e-47 | 1 | 152 | 22 | 173 | NAC domain-containing protein 19 |
4dul_A | 4e-47 | 1 | 152 | 19 | 170 | NAC domain-containing protein 19 |
4dul_B | 4e-47 | 1 | 152 | 19 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024537209.1 | 1e-107 | NAC transcription factor 32 | ||||
Swissprot | Q93VY3 | 8e-47 | NAC72_ARATH; NAC domain-containing protein 72 | ||||
TrEMBL | D8QSZ3 | 1e-112 | D8QSZ3_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ37025 | 1e-112 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 3e-49 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | 71305 |
Entrez Gene | 9663271 |
Publications ? help Back to Top | |||
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