PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 69980 | ||||||||
Common Name | MADS10-2, SELMODRAFT_450991 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 63aa MW: 7222.59 Da PI: 10.0644 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 71.2 | 9e-23 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien+ r+ tf+kR+ g+ KKA+EL +LCd+++a+i+fs+ ++l y+s 69980 9 KRIENSVSRHATFAKRKIGLVKKAQELATLCDIDIALIMFSPVDHLIHYPS 59 79*********************************************9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 2.9E-28 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 24.348 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 9.58E-25 | 2 | 59 | No hit | No description |
SuperFamily | SSF55455 | 6.15E-23 | 2 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-20 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 5.5E-21 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-20 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.5E-20 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 63 aa Download sequence Send to blast |
MGRVKLEIKR IENSVSRHAT FAKRKIGLVK KAQELATLCD IDIALIMFSP VDHLIHYPSD 60 LKY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FM999806 | 1e-99 | Selaginella moellendorffii mRNA for MADS2 protein, allele 1 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024531123.1 | 8e-37 | agamous-like MADS-box protein AGL104 | ||||
Refseq | XP_024539268.1 | 3e-37 | agamous-like MADS-box protein AGL104 | ||||
Swissprot | Q9LM46 | 6e-21 | AG104_ARATH; Agamous-like MADS-box protein AGL104 | ||||
TrEMBL | D8S4X4 | 2e-36 | D8S4X4_SELML; Type II MIKC* MADS-domain transcription factor | ||||
STRING | EFJ20500 | 3e-37 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G22130.1 | 2e-23 | AGAMOUS-like 104 |
Link Out ? help Back to Top | |
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Phytozome | 69980 |
Entrez Gene | 9653667 |
Publications ? help Back to Top | |||
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