PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 69582 | ||||||||
Common Name | SELMODRAFT_59616, SELMODRAFT_69582 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | NF-YC | ||||||||
Protein Properties | Length: 89aa MW: 10102.9 Da PI: 10.6117 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 45.8 | 1.3e-14 | 8 | 85 | 18 | 94 |
NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif.dflvd 94 ++Plarik+i+k d+++k+++ a + +++a + fi lt ++ + + kr++l+ s ++aav+r f dfl + 69582 8 SVSFPLARIKNIIKLDKEIKVVARPALMAITQAAQQFIESLTSIAFSEMLKGKRKSLRLSHLEAAVKRKREFlDFLDE 85 4689***************************************************************99877588754 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00808 | 6.8E-12 | 10 | 73 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 1.2E-18 | 11 | 86 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 9.05E-14 | 11 | 85 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
EKNATNISVS FPLARIKNII KLDKEIKVVA RPALMAITQA AQQFIESLTS IAFSEMLKGK 60 RKSLRLSHLE AAVKRKREFL DFLDESMDI |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 59 | 76 | KRKSLRLSHLEAAVKRKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024521769.1 | 5e-56 | uncharacterized protein LOC112343101 | ||||
Refseq | XP_024535208.1 | 5e-56 | uncharacterized protein LOC112347877 | ||||
TrEMBL | D8QY57 | 6e-56 | D8QY57_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ24094 | 1e-56 | (Selaginella moellendorffii) | ||||
STRING | EFJ35144 | 1e-56 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP9472 | 12 | 13 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G43250.1 | 2e-12 | nuclear factor Y, subunit C13 |
Link Out ? help Back to Top | |
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Phytozome | 69582 |
Entrez Gene | 9637231 | 9655210 |
Publications ? help Back to Top | |||
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