PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

69579

Common Name

SELMODRAFT_69578, SELMODRAFT_69579

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NF-YC

Protein Properties

Length: 116aa MW: 13250.4 Da PI: 4.9598

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
69579	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	164.5	1.4e-51	3	95	9	101
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 +++++ dfk h+lPlarikki+kadedv+mis eaPvl++kace+fileltlr+w+h+eenkrrtl+k+diaaavtrtdifdflvdivpr+++ 69579 3 EVQEVMDFKTHSLPLARIKKIMKADEDVRMISGEAPVLFAKACEMFILELTLRAWMHTEENKRRTLQKNDIAAAVTRTDIFDFLVDIVPREDV 95 67899*************************************************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	3.29E-31	6	86	IPR009072	Histone-fold
Pfam	PF00808	4.1E-23	14	77	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	1.1E-38	15	92	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 116 aa Download sequence Send to blast
MQEVQEVMDF KTHSLPLARI KKIMKADEDV RMISGEAPVL FAKACEMFIL ELTLRAWMHT 60 EENKRRTLQK NDIAAAVTRT DIFDFLVDIV PREDVKDEAL GVSRSALPIG APDMQY

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	7e-55	1	92	4	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	64	70	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024529991.1	2e-81	nuclear transcription factor Y subunit C-2
Refseq	XP_024531272.1	2e-81	nuclear transcription factor Y subunit C-2
Swissprot	Q8LCG7	1e-62	NFYC2_ARATH; Nuclear transcription factor Y subunit C-2
TrEMBL	D8REN4	9e-80	D8REN4_SELML; Uncharacterized protein (Fragment)
STRING	EFJ28198	2e-80	(Selaginella moellendorffii)
STRING	EFJ29692	2e-80	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP315	17	117

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G56170.2	4e-65	nuclear factor Y, subunit C2

Link Out ? help Back to Top
Phytozome	69579
Entrez Gene	9632992 \| 9659762

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li S, et al. HEAT-INDUCED TAS1 TARGET1 Mediates Thermotolerance via HEAT STRESS TRANSCRIPTION FACTOR A1a-Directed Pathways in Arabidopsis. Plant Cell, 2014. 26(4): p. 1764-1780 [PMID:24728648] Mei X, et al. Identification and characterization of paternal-preferentially expressed gene NF-YC8 in maize endosperm. Mol. Genet. Genomics, 2015. 290(5): p. 1819-31 [PMID:25851237] Baud S, et al. Deciphering the Molecular Mechanisms Underpinning the Transcriptional Control of Gene Expression by Master Transcriptional Regulators in Arabidopsis Seed. Plant Physiol., 2016. 171(2): p. 1099-112 [PMID:27208266] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]