PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 69131 | ||||||||
Common Name | SELMODRAFT_69130, SELMODRAFT_69131 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | NAC | ||||||||
Protein Properties | Length: 163aa MW: 18923.8 Da PI: 10.4854 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 171 | 3.6e-53 | 6 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk...leleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelv 100 lppGfrFhPtdeel+v+yL kk++ ++ ++ +i+evd+yk++PwdLpk++ +e+ewyfFs+r++ky++g r+nra++sgyWkatg+dk+++s+ +g++v 69131 6 LPPGFRFHPTDEELMVHYLSKKAAPSHpftAPI-PIIAEVDLYKFDPWDLPKHALFGEREWYFFSPRERKYPNGARPNRAAASGYWKATGTDKPICSStDGRKV 108 79********************99888643233.45***************8777899**************************************9989999* PP NAM 101 glkktLvfykgrapkgektdWvmheyrl 128 g+kk Lvfykgrap+g kt+W+mheyrl 69131 109 GVKKALVFYKGRAPRGAKTNWIMHEYRL 136 **************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.11E-63 | 3 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.781 | 6 | 161 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.3E-28 | 7 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
VAELQLPPGF RFHPTDEELM VHYLSKKAAP SHPFTAPIPI IAEVDLYKFD PWDLPKHALF 60 GEREWYFFSP RERKYPNGAR PNRAAASGYW KATGTDKPIC SSTDGRKVGV KKALVFYKGR 120 APRGAKTNWI MHEYRLVDNP HKPRRKGSRL DDWVLCRIYR KKT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 4e-78 | 1 | 163 | 15 | 170 | NAC domain-containing protein 19 |
3swm_B | 4e-78 | 1 | 163 | 15 | 170 | NAC domain-containing protein 19 |
3swm_C | 4e-78 | 1 | 163 | 15 | 170 | NAC domain-containing protein 19 |
3swm_D | 4e-78 | 1 | 163 | 15 | 170 | NAC domain-containing protein 19 |
3swp_A | 4e-78 | 1 | 163 | 15 | 170 | NAC domain-containing protein 19 |
3swp_B | 4e-78 | 1 | 163 | 15 | 170 | NAC domain-containing protein 19 |
3swp_C | 4e-78 | 1 | 163 | 15 | 170 | NAC domain-containing protein 19 |
3swp_D | 4e-78 | 1 | 163 | 15 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor of the NAC family associated with male fertility. Involved in anther development, but not in senescence. Reduced expression of NAC5 via RNAi leads to male-sterility. {ECO:0000269|PubMed:22278768}. | |||||
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by high salinity. Slightly up-regulated by drought, abscisic acid (ABA) and jasmonic acid. Not induced by cold treatment. {ECO:0000269|PubMed:15319476}. | |||||
UniProt | INDUCTION: Up-regulated by drought, salt and cold treatments. {ECO:0000269|PubMed:18813954}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002961563.2 | 1e-120 | NAC domain-containing protein 67 | ||||
Refseq | XP_002971251.2 | 1e-120 | NAC domain-containing protein 67 | ||||
Swissprot | Q8H4S4 | 1e-77 | NAC10_ORYSJ; NAC domain-containing protein 10 | ||||
Swissprot | Q9LDY8 | 4e-79 | NAC55_ARATH; NAC domain-containing protein 55 | ||||
TrEMBL | D8QRS1 | 1e-117 | D8QRS1_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ27849 | 1e-118 | (Selaginella moellendorffii) | ||||
STRING | EFJ36823 | 1e-118 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15500.1 | 2e-81 | NAC domain containing protein 3 |
Link Out ? help Back to Top | |
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Phytozome | 69131 |
Entrez Gene | 9630485 | 9641792 |