PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 68470 | ||||||||
Common Name | SELMODRAFT_68470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 131aa MW: 14781.9 Da PI: 10.3855 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64 | 3.1e-20 | 71 | 122 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrdpseng.kr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+++AeIrd ++ +r++lg+f+tae+Aa+a+++a+ k++g+ 68470 71 HYRGVRQRP-WGKFAAEIRD----SmRQgARIWLGTFDTAEQAARAYDRAAFKMRGA 122 6********.**********....33235**************************95 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 6.53E-30 | 70 | 129 | No hit | No description |
Pfam | PF00847 | 1.5E-15 | 71 | 121 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-32 | 71 | 129 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.5E-34 | 71 | 131 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.986 | 71 | 129 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.45E-24 | 71 | 130 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 6.0E-12 | 72 | 83 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 6.0E-12 | 95 | 111 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001944 | Biological Process | vasculature development | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0051301 | Biological Process | cell division | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 131 aa Download sequence Send to blast |
ENDSEDMILY GLLKEAARTG WQPLTPKQRK EPEIADAVKP EIPAHCAIPL LTQSETRGTA 60 AMPAASFKRQ HYRGVRQRPW GKFAAEIRDS MRQGARIWLG TFDTAEQAAR AYDRAAFKMR 120 GARALLNFPL Q |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-32 | 68 | 131 | 2 | 65 | ATERF1 |
3gcc_A | 6e-32 | 68 | 131 | 2 | 65 | ATERF1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:9756931}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1. Ethylene induction is completely dependent on a functional ETHYLENE-INSENSITIVE2 (EIN2), whereas induction by wounding does not need EIN2. Induction by salicylic acid (SA) seems to be independent of PAD4 and NPR1. Transcripts accumulate strongly in cycloheximide-treated plants, a protein synthesis inhibitor. Seems to not be influenced by exogenous abscisic acid (ABA), cold, heat, NaCl or drought stress. {ECO:0000269|PubMed:10715325, ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024530632.1 | 1e-83 | uncharacterized protein LOC112346270 | ||||
Swissprot | O80337 | 1e-43 | EF100_ARATH; Ethylene-responsive transcription factor 1A | ||||
TrEMBL | D8QNE1 | 1e-91 | D8QNE1_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ38745 | 2e-92 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G17500.1 | 9e-38 | ethylene responsive element binding factor 1 |
Link Out ? help Back to Top | |
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Phytozome | 68470 |
Entrez Gene | 9642288 |
Publications ? help Back to Top | |||
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