PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 68150
Common NameSELMODRAFT_58190, SELMODRAFT_68150
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family NAC
Protein Properties Length: 129aa    MW: 15159 Da    PI: 9.5464
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
68150genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM180.73.7e-5611252128
    NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkkt 105
            ppGfrF+Ptd+elv +yL++kv+g+++++ ++i+evd+yk+ePwdLp k + ++ ewyfFs+rd+ky++g r+nrat++gyWkatgkd++v s +++++g+kkt
  68150   1 PPGFRFRPTDQELVGFYLARKVSGRSIQA-NIIAEVDLYKCEPWDLPGKSYVTDVEWYFFSPRDRKYPNGWRTNRATEAGYWKATGKDRTVRS-GSRDIGMKKT 102
            89***************************.89***************87788899*************************************9.99******** PP

    NAM 106 LvfykgrapkgektdWvmheyrl 128
            Lvfy+grap+g++tdW+mheyrl
  68150 103 LVFYTGRAPHGQRTDWIMHEYRL 125
            *********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100556.0741129IPR003441NAC domain
PfamPF023653.5E-301125IPR003441NAC domain
SuperFamilySSF1019412.35E-591128IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 129 aa     Download sequence    Send to blast
PPGFRFRPTD QELVGFYLAR KVSGRSIQAN IIAEVDLYKC EPWDLPGKSY VTDVEWYFFS  60
PRDRKYPNGW RTNRATEAGY WKATGKDRTV RSGSRDIGMK KTLVFYTGRA PHGQRTDWIM  120
HEYRLDEDD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A1e-53112516140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269|PubMed:25081480}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002980786.21e-91NAC domain-containing protein 74 isoform X1
SwissprotQ9FFI53e-64NAC86_ARATH; NAC domain-containing protein 86
TrEMBLD8QTJ02e-91D8QTJ0_SELML; Uncharacterized protein (Fragment)
STRINGEFJ179714e-92(Selaginella moellendorffii)
STRINGEFJ371244e-92(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.12e-70NAC domain containing protein 28
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]