PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

68041

Common Name

SELMODRAFT_68041

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Trihelix

Protein Properties

Length: 226aa MW: 25491.8 Da PI: 10.4273

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
68041	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	51.9	2e-16	9	100	2	86
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkm.........rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 Wt+ +laLi+a e+ +l+rg+lk+++W+ev++ + +++ +s +qCk++++ l+k+yk +k++ + ++s s++p+f +l+ 68041 9 WTEGATLALIDAWGERYLHLNRGNLKQKHWREVADEVtkrscldesSSGRSGKSDVQCKNRLDTLKKKYKIEKARLAS--EGSPSKWPFFVKLD 100 *****************************************99877778899*******************9..688889**9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.0E-25	7	102	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
PGHGRDDAWT EGATLALIDA WGERYLHLNR GNLKQKHWRE VADEVTKRSC LDESSSGRSG 60 KSDVQCKNRL DTLKKKYKIE KARLASEGSP SKWPFFVKLD ELIGPSKKGK KRSTPPPSNN 120 GIAPAAGAGA ALTATPVSRD QSRNHRQQQA QQAQATSNDS SSRDFKDLAR AIIKFGEVYE 180 RIESAKQQQL MDLERQRMEF TKDLELQRMQ LFMQTQVELA KMKHGK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024540996.1	1e-140	trihelix transcription factor ASIL2-like
TrEMBL	D8QRJ4	1e-167	D8QRJ4_SELML; Uncharacterized protein (Fragment)
STRING	EFJ36787	1e-168	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP487	16	84

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05550.1	1e-47	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	68041
Entrez Gene	9630444

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]