PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 66769
Common NameSELMODRAFT_66769, WRKY_5
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family WRKY
Protein Properties Length: 271aa    MW: 29837.2 Da    PI: 10.1849
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
66769genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY109.51.6e-34102158259
            --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
   WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
            +Dg+nWrKYGqK+vkgsefprsYY+Cts+gCpvkkkvers+ d++v+ei+Y+geHnh+
  66769 102 EDGFNWRKYGQKQVKGSEFPRSYYKCTSSGCPVKKKVERSQ-DGQVTEIVYKGEHNHP 158
            7****************************************.***************8 PP
2WRKY106.51.4e-33208266159
            ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
   WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
            ldDgy+WrKYGqK vkg+++prsYY+Ct  gCpv+k+ver+++dpk v++tYeg+Hnh+
  66769 208 LDDGYRWRKYGQKIVKGNPYPRSYYKCTNVGCPVRKHVERASNDPKSVITTYEGKHNHD 266
            59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-3088160IPR003657WRKY domain
SuperFamilySSF1182901.24E-2699160IPR003657WRKY domain
SMARTSM007741.9E-38101159IPR003657WRKY domain
PfamPF031061.0E-27102158IPR003657WRKY domain
PROSITE profilePS5081125.327102160IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.7E-37193268IPR003657WRKY domain
SuperFamilySSF1182903.53E-30200268IPR003657WRKY domain
PROSITE profilePS5081138.366203268IPR003657WRKY domain
SMARTSM007741.0E-38208267IPR003657WRKY domain
PfamPF031066.8E-27209266IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
PLDIAASSSP FTIPPGISPT TLFDSPLFAS SQAEPSPTTG SFLMPPPVFD GGGSRMQNHR  60
SPEAKFQPSR SRAAAPAPSE SRPEPQQQQQ QQQQVFVERP SEDGFNWRKY GQKQVKGSEF  120
PRSYYKCTSS GCPVKKKVER SQDGQVTEIV YKGEHNHPRP QKSRRGGGAG AGSSRIDSGG  180
GAREAAAVQR TIREPRVVVQ TPSEIDILDD GYRWRKYGQK IVKGNPYPRS YYKCTNVGCP  240
VRKHVERASN DPKSVITTYE GKHNHDVPAA K
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-40102269878Probable WRKY transcription factor 4
2lex_A3e-40102269878Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY25 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:21336597}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid (PubMed:11449049). Induced by heat stress (PubMed:21336597). {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:21336597}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024529762.11e-140probable WRKY transcription factor 4
SwissprotQ9C5T36e-88WRK26_ARATH; Probable WRKY transcription factor 26
TrEMBLD8RDE80.0D8RDE8_SELML; Uncharacterized protein WRKY_5 (Fragment)
STRINGEFJ300090.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07100.11e-78WRKY DNA-binding protein 26
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]