PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

66160

Common Name

SELMODRAFT_66160

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

G2-like

Protein Properties

Length: 267aa MW: 29536.1 Da PI: 7.9903

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
66160	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.6	2.5e-32	186	241	1	56
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+peLH+rF++a++qLGGs++AtPk+i+e+mkv+gLt+++vkSHLQkYRl+ 66160 186 KARRCWSPELHRRFLNALQQLGGSHVATPKQIREIMKVDGLTNDEVKSHLQKYRLH 241 68****************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	7.6E-29	183	244	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.843	183	243	IPR017930	Myb domain
SuperFamily	SSF46689	4.73E-18	184	244	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	6.8E-28	186	241	IPR006447	Myb domain, plants
Pfam	PF00249	2.6E-7	188	239	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009737	Biological Process	response to abscisic acid
GO:0055062	Biological Process	phosphate ion homeostasis
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
VTALEGERRK IEAFKRELPL CMDIITEGNC SYRDEAIGHD SVTAKSDSVL EEFIPPKTLE 60 ESKRDEKACD PDLDKPSWMA QVQLWSEAKQ IKTQVEIYSK HAVPGIFANS GGAFSPFVRA 120 APSTEEKPGL RSTSDAGLTL SSSESSPRSG VVEETRPTVE KRTVEATTPA ARSTTSSQFE 180 SNSQRKARRC WSPELHRRFL NALQQLGGSH VATPKQIREI MKVDGLTNDE VKSHLQKYRL 240 HTRRPTVTTS QTSEPGGAQV VVVSGIW

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-15	186	239	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-15	186	239	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-15	186	239	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-15	186	239	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00218	DAP	Transfer from AT1G68670	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024525903.1	1e-177	transcription factor HHO2
Refseq	XP_024525904.1	1e-177	transcription factor HHO2
TrEMBL	D8R458	0.0	D8R458_SELML; Uncharacterized protein (Fragment)
STRING	EFJ33402	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP5415	12	21

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68670.1	3e-61	G2-like family protein

Link Out ? help Back to Top
Phytozome	66160
Entrez Gene	9634914

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]