PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

64588

Common Name

SELMODRAFT_450233

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

GRAS

Protein Properties

Length: 363aa MW: 41169.4 Da PI: 7.9455

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
64588	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	268.2	2.6e-82	6	363	4	374
GRAS 4 lLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIleave 107 L+ecA+av+++d+++ al + l++ +s++ +p++Rla +f eAL ar++++++++y+al++ t+++ s + + P ++ h aN Il+a + 64588 6 CLMECARAVAAKDFAAFYALASDLRQVVSSQSTPLERLAMFFIEALVARVTGTGPQTYRALAAGMTTRRILSGS------RIACLPSSRI-HTFANDVILRACA 102 59*********************************************************9988874332222......2457898886.7779***** PP GRAS 108 geervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlh 211 g++rvHi+D+++ G QWp+L++aL+ Rpegpp+l+iTg++ p e+ + g+ L+++A++ gv++ef + ++++e++++ ++++E l+Vn+ +l+ 64588 103 GARRVHIVDYGLFCGQQWPSLIKALSVRPEGPPHLKITGIDLPM---VPEVTQAGQHLTEYARSHGVQLEFCSIQSNSWETVQPV---THSNEFLVVNSNGRLQ 200 **************************************65...999*******************999999999764...678********* PP GRAS 212 rlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekW 315 ++ de v+++++r+ +L+ + ++sPk+vv++ +++++s+ Fl +f aleyy+a ++ ++a l+ + e+r+ +E+ +++ i+nvvac g +++er e++++W 64588 201 NMKDEWVAINNPRKLLLERISKMSPKLVVMTVGNSSMSSPFFLPKFEAALEYYTAKMEYTDAWLSDDLEQRSLMEKT-FQKVIMNVVACDGLDQVERPEKYKTW 303 *************************************************************999****9.********************** PP GRAS 316 rerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 r ++aGFkp p++++ ++ +k+ +k s+ +r ++++++lgWkd + ++SaW+ 64588 304 DVRAKRAGFKPFPVEDEDYERMKTTWGGYKySEHFRCGRDENWVLLGWKDVIMCAMSAWQ 363 **************************99*************************6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	41.644	1	342	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.1E-80	6	363	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 363 aa Download sequence Send to blast
VDIQWCLMEC ARAVAAKDFA AFYALASDLR QVVSSQSTPL ERLAMFFIEA LVARVTGTGP 60 QTYRALAAGM TTRRILSGSR IACLPSSRIH TFANDVILRA CAGARRVHIV DYGLFCGQQW 120 PSLIKALSVR PEGPPHLKIT GIDLPMVPEV TQAGQHLTEY ARSHGVQLEF CSIQSNSWET 180 VQPVTHSNEF LVVNSNGRLQ NMKDEWVAIN NPRKLLLERI SKMSPKLVVM TVGNSSMSSP 240 FFLPKFEAAL EYYTAKMEYT DAWLSDDLEQ RSLMEKTFQK VIMNVVACDG LDQVERPEKY 300 KTWDVRAKRA GFKPFPVEDE DYERMKTTWG GYKYSEHFRC GRDENWVLLG WKDVIMCAMS 360 AWQ

Sequence ? help Back to Top

Protein Sequence Length: 363 aa Download sequence Send to blast

VDIQWCLMEC ARAVAAKDFA AFYALASDLR QVVSSQSTPL ERLAMFFIEA LVARVTGTGP  60
QTYRALAAGM TTRRILSGSR IACLPSSRIH TFANDVILRA CAGARRVHIV DYGLFCGQQW  120
PSLIKALSVR PEGPPHLKIT GIDLPMVPEV TQAGQHLTEY ARSHGVQLEF CSIQSNSWET  180
VQPVTHSNEF LVVNSNGRLQ NMKDEWVAIN NPRKLLLERI SKMSPKLVVM TVGNSSMSSP  240
FFLPKFEAAL EYYTAKMEYT DAWLSDDLEQ RSLMEKTFQK VIMNVVACDG LDQVERPEKY  300
KTWDVRAKRA GFKPFPVEDE DYERMKTTWG GYKYSEHFRC GRDENWVLLG WKDVIMCAMS  360
AWQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5hyz_A	2e-30	3	363	4	375	GRAS family transcription factor containing protein, expressed
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002963996.1	0.0	scarecrow-like protein 14
TrEMBL	D8QYZ5	0.0	D8QYZ5_SELML; GRAS-family protein
STRING	EFJ34329	0.0	(Selaginella moellendorffii)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	7e-67	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	64588
Entrez Gene	9655586

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]