PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 61688
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ARF
Protein Properties Length: 622aa    MW: 68379.4 Da    PI: 8.5289
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
61688genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.88.9e-23107208199
            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
            f k+lt+sd+++ g +++p+ +ae++      +++++  +t+  +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD +vF   ++ ++el+v+v+r
  61688 107 FAKTLTQSDANNGGGFSVPRYCAETIfprldySIDPPV-QTVLAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDAIVFL--RSASGELCVGVRR 207
            89****************************99555554.49************************************************..4479999****98 PP

            S CS
     B3  99 k 99 
            +
  61688 208 S 208
            5 PP
2Auxin_resp108.95.5e-36261344183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+ +++FevvY+Prast+eF+v+++ v+++l++++ +GmRfkmafetedss++++ +Gt+++v+ +dp+rWp S+Wr L+
       61688 261 AASLAAAGQAFEVVYYPRASTAEFCVRASVVKASLEHSWYPGMRFKMAFETEDSSRISWfMGTISAVQPADPIRWPSSPWRILQ 344
                 678899****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.5E-35102212IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-29104219IPR015300DNA-binding pseudobarrel domain
CDDcd100173.50E-20106207No hitNo description
PfamPF023621.9E-20107208IPR003340B3 DNA binding domain
PROSITE profilePS5086312.435107209IPR003340B3 DNA binding domain
SMARTSM010192.7E-19107209IPR003340B3 DNA binding domain
PfamPF065073.8E-32261344IPR010525Auxin response factor
PROSITE profilePS5174517.052546622IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 622 aa     Download sequence    Send to blast
KKGLDSQLWH ACAGGMVQLP PVGAKVIYFP QGHGEQAAAI PDFPRSGGTI LCRVISVDFL  60
ADAETDEVYA KMKLQPEVAP APLFGTRMGD DEELVSSPTV VEKPASFAKT LTQSDANNGG  120
GFSVPRYCAE TIFPRLDYSI DPPVQTVLAK DVHGEIWKFR HIYRGTPRRH LLTTGWSTFV  180
NQKKLVAGDA IVFLRSASGE LCVGVRRSMR GPGNGDSGIS WHSSPGQSGY SELLSGNGSG  240
TSGASFARNR ARVTSKSVLE AASLAAAGQA FEVVYYPRAS TAEFCVRASV VKASLEHSWY  300
PGMRFKMAFE TEDSSRISWF MGTISAVQPA DPIRWPSSPW RILQVSWDEP DLLQGVNRVS  360
PWQVELVSTL PMQLPPFSLP RKKIRPLDLQ FGESQGGFMG LPMAALANNV LGQMNPWQSL  420
SEEVPAGMQG ARQERFYGLT LSDPPHHLRL HRSPGRNELQ RFFSLGSRLI RTTIRKSSSC  480
SSNRTRVSGN VTNNTTDMTH KLFTNVTSTS LRLCQGESPD SGVTNESGSS KWMKEHSGAD  540
PDDDGVIHCK IFFEKEEVGR TLDLSLFGNY EELYDRLASM FTMDKSKLSG RVVYRDLEGS  600
TIYIGGEPYG NFVKSVRRLT IL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-84136548388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00461DAPTransfer from AT4G30080Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024530276.10.0auxin response factor 16
RefseqXP_024530277.10.0auxin response factor 16
SwissprotQ93YR90.0ARFP_ARATH; Auxin response factor 16
TrEMBLD8RDP60.0D8RDP6_SELML; Auxin response factor
STRINGEFJ295370.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  2. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  3. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  4. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  5. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  6. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  7. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  8. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]