PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

61520

Common Name

SELMODRAFT_61520

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

LBD

Protein Properties

Length: 107aa MW: 11508.5 Da PI: 8.4116

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
61520	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.8	9.3e-30	2	102	1	96
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C++C+vlr++C+++Cvl++++ p++q +++ +v+k+FG++ ++ l++++pe++r+++++sl+yeA+ r+ +Pv Gavg++ +++++ +q ++e++l 61520 2 SCNGCRVLRKGCSDGCVLRQCLrwiesPDAQGHATVFVAKFFGRAGMMALISSVPESQRPALFQSLLYEACGRTINPVFGAVGLLCSGSWKHCQDAVETVL 102 6***********************99****************************************************************9999876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.918	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.2E-25	2	100	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 107 aa Download sequence Send to blast
MSCNGCRVLR KGCSDGCVLR QCLRWIESPD AQGHATVFVA KFFGRAGMMA LISSVPESQR 60 PALFQSLLYE ACGRTINPVF GAVGLLCSGS WKHCQDAVET VLKGGLL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002964328.2	2e-73	uncharacterized protein LOC9654262
Swissprot	Q9SN23	4e-58	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	D8QYR2	8e-73	D8QYR2_SELML; Uncharacterized protein (Fragment)
STRING	EFJ34661	1e-73	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP403	16	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-60	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	61520
Entrez Gene	9654262

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]