PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

61084

Common Name

SELMODRAFT_61084

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

Nin-like

Protein Properties

Length: 606aa MW: 67262.6 Da PI: 9.0959

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
61084	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88.6	5.2e-28	387	437	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek +sl++l++yFs+ +kdAAk++gvc+T+LK+iCRq+GI+RWP+Rk+k++ 61084 387 EKMVSLNVLQQYFSGRLKDAAKSIGVCPTTLKKICRQHGIDRWPSRKLKKI 437 7899*********************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.325	371	457	IPR003035	RWP-RK domain
Pfam	PF02042	1.8E-24	390	437	IPR003035	RWP-RK domain
SuperFamily	SSF54277	1.6E-13	534	606	No hit	No description
PROSITE profile	PS51745	12.249	541	606	IPR000270	PB1 domain
SMART	SM00666	8.5E-5	541	606	IPR000270	PB1 domain
Pfam	PF00564	8.8E-10	542	606	IPR000270	PB1 domain
CDD	cd05992	1.24E-14	542	606	No hit	No description
Gene3D	G3DSA:3.10.20.240	2.1E-13	543	606	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 606 aa Download sequence Send to blast
ALQRMNLSTN GQVLIQVWMP YMESNTVFLT TKDQPYVMSK SFDKFVRYRS ASVKFIFPVR 60 DGLQAYPGLP GRVFMSQAAE WTPNVRFYSC REFLRVKEAV NCDVKGTLAL PVMEAGSRAC 120 VAVLEVVTSI EKVQYGPEID DISNALRAVS LATISSAAPI SEIRENRQSA WLEINEVLMT 180 VCRTHILPLA QVWIPVSSNG VVKLVTKGAP FYGDSGFRKP CAEHVLLKGQ GLPGKALLSI 240 QPVFKEDVRK YSKDEYPLGH YARLFNLVAA VAVRFRSNLT GGDDYIFEFF LPLSCNSGTQ 300 QQDLLDSMSK SLQRVSRSLR TVTRQELALE APGAFSGSQQ QQQQVFKAEL PKRTYESSEV 360 ESEIVEESSV TSSSVTVRKK AKRGAAEKMV SLNVLQQYFS GRLKDAAKSI GVCPTTLKKI 420 CRQHGIDRWP SRKLKKIDRQ VKKIQNMLSS VQGLSPGSTV VSVGGVSFGD VTSSRSGGIA 480 AAAALATTAD YQKQAHTKST IEHEVSSSSQ LHRDKSSSSL SSNDHSPAEL ERTPNRDDSS 540 LFTVKVRHGS DTVRFKLPVD QAGIAEFREE IATRMNLQGR EFGLKYMDED GEWIRLENEE 600 EFSECM

Sequence ? help Back to Top

Protein Sequence Length: 606 aa Download sequence Send to blast

ALQRMNLSTN GQVLIQVWMP YMESNTVFLT TKDQPYVMSK SFDKFVRYRS ASVKFIFPVR  60
DGLQAYPGLP GRVFMSQAAE WTPNVRFYSC REFLRVKEAV NCDVKGTLAL PVMEAGSRAC  120
VAVLEVVTSI EKVQYGPEID DISNALRAVS LATISSAAPI SEIRENRQSA WLEINEVLMT  180
VCRTHILPLA QVWIPVSSNG VVKLVTKGAP FYGDSGFRKP CAEHVLLKGQ GLPGKALLSI  240
QPVFKEDVRK YSKDEYPLGH YARLFNLVAA VAVRFRSNLT GGDDYIFEFF LPLSCNSGTQ  300
QQDLLDSMSK SLQRVSRSLR TVTRQELALE APGAFSGSQQ QQQQVFKAEL PKRTYESSEV  360
ESEIVEESSV TSSSVTVRKK AKRGAAEKMV SLNVLQQYFS GRLKDAAKSI GVCPTTLKKI  420
CRQHGIDRWP SRKLKKIDRQ VKKIQNMLSS VQGLSPGSTV VSVGGVSFGD VTSSRSGGIA  480
AAAALATTAD YQKQAHTKST IEHEVSSSSQ LHRDKSSSSL SSNDHSPAEL ERTPNRDDSS  540
LFTVKVRHGS DTVRFKLPVD QAGIAEFREE IATRMNLQGR EFGLKYMDED GEWIRLENEE  600
EFSECM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002963404.2	0.0	protein NLP9
TrEMBL	D8QWP3	0.0	D8QWP3_SELML; NIN-like transcription factor (Fragment)
STRING	EFJ35275	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP299	16	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	1e-109	Nin-like family protein

Link Out ? help Back to Top
Phytozome	61084
Entrez Gene	9643614

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]