PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 59650 | ||||||||
Common Name | SELMODRAFT_49607, SELMODRAFT_59650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | LBD | ||||||||
Protein Properties | Length: 93aa MW: 10871.8 Da PI: 8.5035 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.5 | 7.9e-37 | 1 | 93 | 2 | 94 |
DUF260 2 CaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 CaaC+++rr+C++ C+la+yfpa+++++f n +klFG+sn+l+ll+++ ++r+++m+sl++eA++r +dPv+G++g+i l+qql++l+ el 59650 1 CAACRFQRRRCSPACPLAKYFPASENQRFMNCKKLFGVSNMLRLLNQVLVKDRDETMQSLMFEADVREQDPVHGCMGIICMLEQQLDKLRREL 93 ****************************************************************************************99875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 3.9E-36 | 1 | 93 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 22.423 | 1 | 93 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
CAACRFQRRR CSPACPLAKY FPASENQRFM NCKKLFGVSN MLRLLNQVLV KDRDETMQSL 60 MFEADVREQD PVHGCMGIIC MLEQQLDKLR REL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 5e-30 | 1 | 93 | 12 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 5e-30 | 1 | 93 | 12 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002988022.2 | 2e-64 | LOB domain-containing protein 22 | ||||
Refseq | XP_024533779.1 | 2e-64 | LOB domain-containing protein 22 | ||||
TrEMBL | D8RNR9 | 8e-62 | D8RNR9_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ10814 | 1e-62 | (Selaginella moellendorffii) | ||||
STRING | EFJ26128 | 1e-62 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.4 | 1e-31 | LBD family protein |
Link Out ? help Back to Top | |
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Phytozome | 59650 |
Entrez Gene | 9636497 | 9656100 |
Publications ? help Back to Top | |||
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