PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 59642 | ||||||||
Common Name | SELMODRAFT_49270, SELMODRAFT_59642 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | LBD | ||||||||
Protein Properties | Length: 93aa MW: 10037.7 Da PI: 9.4701 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.8 | 6.3e-37 | 6 | 93 | 1 | 87 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++C++ap+f +eq +++fa+vhk+FGasnv+kll+++p +r+da+ ++ yeA+ar++dPvyG+v++i +lq+q+ 59642 6 PCGACKFLRRKCVNNCIFAPHFNSEQgAARFAAVHKIFGASNVTKLLHHIPVAKRSDAVLTISYEAQARLSDPVYGCVATIVALQHQV 93 7***********************9989*********************************************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.338 | 5 | 93 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.1E-36 | 6 | 93 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway | ||||
GO:1900150 | Biological Process | regulation of defense response to fungus |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MSNGAPCGAC KFLRRKCVNN CIFAPHFNSE QGAARFAAVH KIFGASNVTK LLHHIPVAKR 60 SDAVLTISYE AQARLSDPVY GCVATIVALQ HQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-36 | 4 | 93 | 9 | 97 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-36 | 4 | 93 | 9 | 97 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002973794.2 | 2e-62 | LOB domain-containing protein 20 | ||||
Refseq | XP_002983602.2 | 4e-63 | LOB domain-containing protein 20 | ||||
Swissprot | Q9SRV3 | 3e-52 | LBD20_ARATH; LOB domain-containing protein 20 | ||||
TrEMBL | D8RRS7 | 2e-62 | D8RRS7_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ15503 | 4e-63 | (Selaginella moellendorffii) | ||||
STRING | EFJ24749 | 4e-63 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP405 | 15 | 100 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03760.1 | 1e-54 | LOB domain-containing protein 20 |
Link Out ? help Back to Top | |
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Phytozome | 59642 |
Entrez Gene | 9642855 | 9655072 |
Publications ? help Back to Top | |||
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