PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 59628
Common NameSELMODRAFT_59628
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family B3
Protein Properties Length: 127aa    MW: 14607.8 Da    PI: 10.5453
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
59628genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3802.4e-2513113198
            EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
            f kv tpsdv+k++rlv+pk++ae+           ++++ l+++d  s + W ++++y+ +s++yvltkGW +Fvk+++L++gD++ F++    + el++  +
  59628  13 FYKVVTPSDVGKLNRLVIPKQHAERWfpldpcL-R-KKGRLLSFQDvVSRELWWFRYSYWSSSQSYVLTKGWIRFVKDKDLQAGDIISFERG--ARHELYINCR 112
            789********************999*998752.2.2566899999778899**************************************43..5666677776 PP

            - CS
     B3  98 r 98 
            +
  59628 113 K 113
            6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.105.0E-349112IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.32E-2811113IPR015300DNA-binding pseudobarrel domain
CDDcd100171.79E-1811101No hitNo description
SMARTSM010192.9E-1913115IPR003340B3 DNA binding domain
PfamPF023621.8E-2213113IPR003340B3 DNA binding domain
PROSITE profilePS5086313.39413115IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
ATGGGAAAHE HLFYKVVTPS DVGKLNRLVI PKQHAERWFP LDPCLRKKGR LLSFQDVVSR  60
ELWWFRYSYW SSSQSYVLTK GWIRFVKDKD LQAGDIISFE RGARHELYIN CRKRPTSGRA  120
AFAPLPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A4e-4671182117B3 domain-containing transcription factor NGA1
5os9_B4e-4671182117B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA1, NGA2 and NGA4. {ECO:0000269|PubMed:16603651}.
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002973331.28e-92B3 domain-containing transcription factor NGA1, partial
RefseqXP_024537394.19e-92B3 domain-containing transcription factor NGA1, partial
SwissprotO827998e-44NGA1_ARATH; B3 domain-containing transcription factor NGA1
SwissprotQ9MAN11e-43NGA3_ARATH; B3 domain-containing transcription factor NGA3
TrEMBLD8RQU12e-89D8RQU1_SELML; Uncharacterized protein (Fragment)
STRINGEFJ257053e-90(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP36516108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.14e-46B3 family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  4. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  5. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  6. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  7. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]