PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 59621 | ||||||||
Common Name | SELMODRAFT_59621, SELMODRAFT_59622 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | B3 | ||||||||
Protein Properties | Length: 116aa MW: 13782.7 Da PI: 10.5805 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 88.6 | 5e-28 | 4 | 106 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f kv tpsdv+k++rlv+pk++ae++ ++ k++ + e+ +g++W ++++y+++s++yv+tkGW +Fvk+n+Lk+gD+v F++ +++ ++++++ ++ 59621 4 FYKVVTPSDVGKLNRLVIPKQHAERCfpldpSLRKKGRFLSFQESFTGKVWWFRYSYWNSSQSYVFTKGWIRFVKENKLKAGDIVSFERGSSRHENFYISCRK 106 789************************988755555544444455899****************************************765566666777666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.5E-38 | 1 | 111 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.28E-23 | 2 | 106 | No hit | No description |
SuperFamily | SSF101936 | 1.57E-30 | 2 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 14.677 | 4 | 108 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.6E-25 | 4 | 106 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-20 | 4 | 106 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 116 aa Download sequence Send to blast |
EHLFYKVVTP SDVGKLNRLV IPKQHAERCF PLDPSLRKKG RFLSFQESFT GKVWWFRYSY 60 WNSSQSYVFT KGWIRFVKEN KLKAGDIVSF ERGSSRHENF YISCRKRPRT PSDDPG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 3e-46 | 1 | 110 | 5 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 3e-46 | 1 | 110 | 5 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024537223.1 | 2e-82 | B3 domain-containing transcription factor NGA1-like | ||||
Swissprot | O82799 | 1e-45 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | D8RQU3 | 2e-80 | D8RQU3_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ22224 | 3e-81 | (Selaginella moellendorffii) | ||||
STRING | EFJ25515 | 3e-81 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP365 | 16 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 5e-48 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | 59621 |
Entrez Gene | 9637891 | 9649166 |