PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 58662 | ||||||||
Common Name | SELMODRAFT_58661, SELMODRAFT_58662 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | NF-YC | ||||||||
Protein Properties | Length: 147aa MW: 17069.6 Da PI: 5.2404 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 181.9 | 5.6e-57 | 11 | 115 | 1 | 102 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprdel 101 ql++fw+ q ie+++dfknh+lPlarikki+kadedv+misaeaPvl++kace+fileltlrsw+h+eenkrrtl+k+diaaa+trtdifdflvdivprdel 58662 11 QLQQFWQGQmqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPVLFAKACEMFILELTLRSWIHTEENKRRTLQKNDIAAAITRTDIFDFLVDIVPRDEL 114 89****99877789****************************************************************************************97 PP NF-YC 102 k 102 k 58662 115 K 115 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 7.21E-35 | 4 | 105 | IPR009072 | Histone-fold |
Gene3D | G3DSA:1.10.20.10 | 1.4E-38 | 25 | 97 | IPR009072 | Histone-fold |
Pfam | PF00808 | 4.2E-22 | 33 | 96 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
YQQMQQQHQQ QLQQFWQGQM QEIEQVNDFK NHQLPLARIK KIMKADEDVR MISAEAPVLF 60 AKACEMFILE LTLRSWIHTE ENKRRTLQKN DIAAAITRTD IFDFLVDIVP RDELKEETLG 120 VTRAAMPVGP PGDPMQYPGL YYVPPAA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 2e-57 | 19 | 111 | 3 | 95 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 83 | 89 | RRTLQKN |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002982931.2 | 1e-106 | nuclear transcription factor Y subunit C-2 | ||||
Refseq | XP_024542637.1 | 1e-106 | nuclear transcription factor Y subunit C-2 | ||||
Swissprot | Q8LCG7 | 1e-70 | NFYC2_ARATH; Nuclear transcription factor Y subunit C-2 | ||||
TrEMBL | D8SEV8 | 1e-105 | D8SEV8_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ16176 | 1e-106 | (Selaginella moellendorffii) | ||||
STRING | EFJ17045 | 1e-106 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP315 | 17 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G56170.2 | 2e-66 | nuclear factor Y, subunit C2 |
Link Out ? help Back to Top | |
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Phytozome | 58662 |
Entrez Gene | 9634572 | 9662357 |