PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 58353 | ||||||||
Common Name | SELMODRAFT_58353 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | C2H2 | ||||||||
Protein Properties | Length: 164aa MW: 18897.1 Da PI: 10.2132 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 23.9 | 1.1e-07 | 20 | 41 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C++Cgk F+r nL+ H+r H 58353 20 FCEICGKGFKRDANLRMHMRGH 41 6*******************98 PP | |||||||
2 | zf-C2H2 | 11.2 | 0.0012 | 141 | 155 | 6 | 20 |
TTEEESSHHHHHHHH CS zf-C2H2 6 CgksFsrksnLkrHi 20 Cg+sFsrk+ L H+ 58353 141 CGTSFSRKDKLLGHL 155 ************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.52E-6 | 16 | 43 | No hit | No description |
PROSITE profile | PS50157 | 12.113 | 19 | 46 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0026 | 19 | 41 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 6.5E-7 | 20 | 73 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
Pfam | PF12874 | 5.7E-5 | 20 | 41 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 21 | 41 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 110 | 71 | 104 | IPR015880 | Zinc finger, C2H2-like |
SMART | SM00355 | 31 | 109 | 131 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 8.559 | 130 | 163 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
GSYDLIELDA MEILAEHTHF CEICGKGFKR DANLRMHMRG HGDEYKTAAA LSKPRHLIQQ 60 QLVQASRSKR YSCPFEGCKR HKLHPKFSPL KTVLCVKNHY RRSHCPKMLT CSKCRSKKFS 120 VVADLRTHEK HCGREKWMCS CGTSFSRKDK LLGHLTLFVG HKPS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024536918.1 | 1e-119 | zinc finger protein STOP1 homolog | ||||
Swissprot | Q9C8N5 | 1e-81 | STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 | ||||
TrEMBL | D8RYU5 | 1e-117 | D8RYU5_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ22636 | 1e-118 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP830 | 16 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G34370.3 | 6e-85 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 58353 |
Entrez Gene | 9648806 |