PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 56610 | ||||||||
Common Name | SELMODRAFT_46532, SELMODRAFT_56610 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | bHLH | ||||||||
Protein Properties | Length: 184aa MW: 19865.5 Da PI: 6.523 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 45.8 | 1.1e-14 | 19 | 65 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+e+ErrRR+riN+ +++Lr llP+ +K +Ka+ L +++e++k+L 56610 19 KSHSEAERRRRERINNHLNTLRGLLPST-----TKTDKASLLAEVIEHVKDL 65 79*************************9.....8****************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.622 | 16 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.9E-12 | 19 | 65 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.24E-4 | 19 | 68 | No hit | No description |
SuperFamily | SSF47459 | 6.67E-15 | 20 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.5E-15 | 20 | 87 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.1E-13 | 22 | 71 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:3.30.70.260 | 3.8E-7 | 103 | 149 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009718 | Biological Process | anthocyanin-containing compound biosynthetic process | ||||
GO:0016036 | Biological Process | cellular response to phosphate starvation | ||||
GO:0080147 | Biological Process | root hair cell development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 184 aa Download sequence Send to blast |
LSKMTPQEII DAKALAASKS HSEAERRRRE RINNHLNTLR GLLPSTTKTD KASLLAEVIE 60 HVKDLKRQAA EIAEGGPVPT DVDELKVDTD ASSSDGNFVL KASLCCEDRP DLLSDLTKAL 120 RTLKLRTLKA EIATLGGRVK NVILIGKDHS DEQGGAAMES SSDGTGDRPS VSCVQEALRA 180 VIER |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 29 | ERRRRE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for MONOPTEROS-dependent root initiation in embryo. Transcriptionally controlled by MONOPTEROS. {ECO:0000269|PubMed:20220754}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002978655.2 | 1e-128 | transcription factor bHLH30 | ||||
Swissprot | Q9LS08 | 2e-61 | BH032_ARATH; Transcription factor AIG1 | ||||
TrEMBL | D8S5R9 | 1e-128 | D8S5R9_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ14235 | 1e-129 | (Selaginella moellendorffii) | ||||
STRING | EFJ20102 | 1e-129 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP377 | 15 | 106 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G25710.1 | 3e-47 | basic helix-loop-helix 32 |
Link Out ? help Back to Top | |
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Phytozome | 56610 |
Entrez Gene | 9644646 | 9653873 |