PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 55684 | ||||||||
Common Name | RR1-1, SELMODRAFT_442188 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ARR-B | ||||||||
Protein Properties | Length: 251aa MW: 28519.7 Da PI: 6.1755 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.9 | 9.8e-28 | 185 | 238 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+ eLH++Fv+av++L ++kA+Pk+ilelm+v+gLt+e+v+SHLQkYRl 55684 185 KPRVVWSVELHQQFVNAVNKL-NIDKAVPKKILELMDVPGLTRENVASHLQKYRL 238 79*******************.9*******************************8 PP | |||||||
2 | Response_reg | 82.6 | 1.2e-27 | 9 | 117 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTES CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGak 95 vl+vdD+++ + +l+ +l++ +y +v+++ +++ al+ll+e++ +Dl++ D+ mp+mdG++ll+ e++lp+i++++ g+ + + + + Ga 55684 9 VLVVDDDQTTLTILEAMLRRCRY-NVTTCGKATTALALLREHKndFDLVISDVYMPDMDGFKLLELVGL-EMDLPVIMMSTDGDYNNVMKGITHGAC 103 89*********************.***************888888*******************87754.558************************ PP EEEESS--HHHHHH CS Response_reg 96 dflsKpfdpeelvk 109 d+l Kp+ +eel++ 55684 104 DYLLKPVRMEELRN 117 ************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 4.0E-145 | 1 | 251 | IPR017053 | Response regulator B-type, plant |
Gene3D | G3DSA:3.40.50.2300 | 7.1E-43 | 6 | 142 | No hit | No description |
SuperFamily | SSF52172 | 6.69E-37 | 6 | 131 | IPR011006 | CheY-like superfamily |
SMART | SM00448 | 1.1E-32 | 7 | 119 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 43.276 | 8 | 123 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 1.9E-24 | 9 | 118 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 7.65E-28 | 10 | 122 | No hit | No description |
PROSITE profile | PS51294 | 9.185 | 182 | 241 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.31E-20 | 183 | 242 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-29 | 184 | 243 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.0E-24 | 185 | 238 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 5.7E-7 | 187 | 237 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
DQFPVGMRVL VVDDDQTTLT ILEAMLRRCR YNVTTCGKAT TALALLREHK NDFDLVISDV 60 YMPDMDGFKL LELVGLEMDL PVIMMSTDGD YNNVMKGITH GACDYLLKPV RMEELRNIWQ 120 HLVRKRKNEA RETETLTPAE ADKLKGGGGD DVEHLSSACS KKRKDVKEED EGVDHDSEDP 180 SSLKKPRVVW SVELHQQFVN AVNKLNIDKA VPKKILELMD VPGLTRENVA SHLQKYRLYL 240 KRISAQQPQN S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 5e-21 | 181 | 244 | 1 | 64 | ARR10-B |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024534380.1 | 0.0 | two-component response regulator ARR1 isoform X1 | ||||
Refseq | XP_024534381.1 | 0.0 | two-component response regulator ARR1 isoform X2 | ||||
Swissprot | Q6K8X6 | 1e-101 | ORR23_ORYSJ; Two-component response regulator ORR23 | ||||
TrEMBL | D8RRG0 | 0.0 | D8RRG0_SELML; Type B response regulator | ||||
STRING | EFJ25391 | 0.0 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP292 | 17 | 120 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G16110.1 | 1e-103 | response regulator 2 |
Link Out ? help Back to Top | |
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Phytozome | 55684 |
Entrez Gene | 9642207 |
Publications ? help Back to Top | |||
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