PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 51695
Common NameARF10B-1, SELMODRAFT_443304
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family ARF
Protein Properties Length: 665aa    MW: 71780.4 Da    PI: 7.316
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
51695genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.74.4e-23106207199
            EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
     B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
            f k+lt+sd+++ g +++p+ +ae++         ++ +  t+  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD +vF   +++++el+v+v+
  51695 106 FAKTLTQSDANNGGGFSVPRYCAETIfprldysVDPPVQ--TVLAKDVHGEVWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDAIVFL--RSNSGELCVGVR 205
            89****************************985434444..899**********************************************..458999*****9 PP

            -S CS
     B3  98 rk 99 
            r+
  51695 206 RS 207
            85 PP
2Auxin_resp107.51.5e-35283366183
  Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                 aa+ a+++++FevvY+Prast+eF+v+++ v++al++ + +GmRfkmafetedss++++ +Gt+++v+++dp+ Wp S+Wr+L+
       51695 283 AATLAASGKAFEVVYYPRASTAEFCVRAQTVRAALSHGWYAGMRFKMAFETEDSSRISWfMGTISAVQAADPILWPSSPWRVLQ 366
                 688999****************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.01E-2998219IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-3599210IPR015300DNA-binding pseudobarrel domain
CDDcd100171.00E-20105206No hitNo description
PfamPF023627.7E-21106207IPR003340B3 DNA binding domain
SMARTSM010191.5E-19106208IPR003340B3 DNA binding domain
PROSITE profilePS5086312.534106208IPR003340B3 DNA binding domain
PfamPF065071.6E-31283366IPR010525Auxin response factor
PROSITE profilePS5174514.86587665IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 665 aa     Download sequence    Send to blast
GGEEKHLDQQ LWQACAGSMV QLPTVGSKII YFPQGHAEQA ASSPDFPRAL GPAGTVPCRV  60
LSVKFLADKE TDEVFASLRL HPESGSDEDN DRAAALSPSP EKPASFAKTL TQSDANNGGG  120
FSVPRYCAET IFPRLDYSVD PPVQTVLAKD VHGEVWKFRH IYRGTPRRHL LTTGWSTFVN  180
HKKLVAGDAI VFLRSNSGEL CVGVRRSMRG GGSGNADALL WHSASSRSSS RWELRPPMDT  240
GLSDGTLMGE NGSSRSAGGG GGNGGGSFTR NRAKVTAKSV LDAATLAASG KAFEVVYYPR  300
ASTAEFCVRA QTVRAALSHG WYAGMRFKMA FETEDSSRIS WFMGTISAVQ AADPILWPSS  360
PWRVLQVAWD EPDLLQGVSR VSPWQVELVS TLPMQLPPFS LPRKKFRQTP APEGQSFSGL  420
PTTTFANGVL GQANPWHGLS DDVPAGMQGA RHERLYGLTF SECQPTRIHS GLLENRYQAQ  480
DIPVAATLGY GATDLRLGNV FPQGGSGGGE QRTLVTTVLC NGSQNDSGVS CTESSCNKQG  540
TFLLFGKKIE TARVQEQQNS AGSSSEATVL SWEKKDRLEG SSSDEESSQC RVFMESGDVK  600
RTLDLSSFGS YDELYKQLAT VFCVDMAKIS GRVVYKDSEG STIHTGGEPY ANFVKSVRRL  660
TILAD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A2e-72738719353Auxin response factor 1
4ldw_A2e-72738719353Auxin response factor 1
4ldw_B2e-72738719353Auxin response factor 1
4ldx_A2e-72738719353Auxin response factor 1
4ldx_B2e-72738719353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024537658.10.0auxin response factor 16
SwissprotQ93YR90.0ARFP_ARATH; Auxin response factor 16
TrEMBLD8S0C80.0D8S0C8_SELML; Auxin response factor
STRINGEFJ220310.0(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Yang ZB, et al.
    TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2889-904
    [PMID:25052716]
  3. Bennett T,van den Toorn A,Willemsen V,Scheres B
    Precise control of plant stem cell activity through parallel regulatory inputs.
    Development, 2014. 141(21): p. 4055-64
    [PMID:25256342]
  4. Zhang GZ, et al.
    Ectopic expression of UGT75D1, a glycosyltransferase preferring indole-3-butyric acid, modulates cotyledon development and stress tolerance in seed germination of Arabidopsis thaliana.
    Plant Mol. Biol., 2016. 90(1-2): p. 77-93
    [PMID:26496910]
  5. Ye Y, et al.
    Germostatin resistance locus 1 encodes a PHD finger protein involved in auxin-mediated seed dormancy and germination.
    Plant J., 2016. 85(1): p. 3-15
    [PMID:26611158]
  6. Liu Z, et al.
    Repression of callus initiation by the miRNA-directed interaction of auxin-cytokinin in Arabidopsis thaliana.
    Plant J., 2016. 87(4): p. 391-402
    [PMID:27189514]
  7. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  8. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  9. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]