PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

509

Common Name

SELMODRAFT_509

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

NF-X1

Protein Properties

Length: 714aa MW: 78273.2 Da PI: 8.3089

Description

NF-X1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
509	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-NF-X1	20.5	1e-06	117	135	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 C+ H+C lCH+GpCppCpq 509 117 CS-HTCVLLCHPGPCPPCPQ 135 99.****************8 PP
2	zf-NF-X1	21.5	4.9e-07	169	188	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG H+C ++CHeG+C+pC++ 509 169 CGVHSCDEICHEGECKPCSK 188 ******************85 PP
3	zf-NF-X1	22.9	1.9e-07	356	375	1	20
zf-NF-X1 1 CGkHkCqklCHeGpCppCpq 20 CG+HkC ++CH+G C pCp+ 509 356 CGNHKCPAPCHRGLCAPCPL 375 ******************95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS01359	0	9	72	IPR019786	Zinc finger, PHD-type, conserved site
SMART	SM00438	0.0012	117	135	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	0.021	117	134	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	2.13E-7	159	207	No hit	No description
SMART	SM00438	0.0016	169	188	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	2.6E-5	169	187	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	1.05E-5	212	252	No hit	No description
SMART	SM00438	2.6	222	241	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	4.80E-8	266	315	No hit	No description
SMART	SM00438	1.1	276	296	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	0.01	276	295	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	1.65E-6	319	367	No hit	No description
SMART	SM00438	0.32	329	348	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	0.099	329	347	IPR000967	Zinc finger, NF-X1-type
CDD	cd06008	4.00E-10	346	394	No hit	No description
SMART	SM00438	0.0012	356	375	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	6.3E-5	356	374	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	92	413	434	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	6.7	423	432	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	120	442	484	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	24	442	451	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	120	521	561	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	0.051	521	531	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	5.4	571	589	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	8.1	573	588	IPR000967	Zinc finger, NF-X1-type
SMART	SM00438	0.86	634	653	IPR000967	Zinc finger, NF-X1-type
Pfam	PF01422	0.45	634	651	IPR000967	Zinc finger, NF-X1-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007623	Biological Process	circadian rhythm
GO:0009651	Biological Process	response to salt stress
GO:0009908	Biological Process	flower development
GO:0010310	Biological Process	regulation of hydrogen peroxide metabolic process
GO:0042335	Biological Process	cuticle development
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:2000037	Biological Process	regulation of stomatal complex patterning
GO:0005634	Cellular Component	nucleus
GO:0000987	Molecular Function	core promoter proximal region sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 714 aa Download sequence Send to blast
ATKGGASTCL ICLEKIRKID PIWHCKQGCF AVLHLVCIQS WARQALSTSE NSSAGRNSSS 60 RTSPACWHCP KCRRDYPQAE IPREYRCYCG KEVDPRSDPW LTPHSCGERC ELELGLCSHT 120 CVLLCHPGPC PPCPQLVQLA CHCGKLAELR RCGHKSFSCQ RLCSKRLGCG VHSCDEICHE 180 GECKPCSKFG VHRCRCGSVT EVRPCSQADF QCERICDKEL SCKKHVCGKQ CHAGGCGECE 240 LQGRRTCACG KEAYKDLACD VKVPTCGSTC EKLLACGLHR CPERCHAGSC VGTCRVLINK 300 RCRCGSTAKE VPCYQDLVCE RKCQHIRNCQ RHACRRRCCD GDCPPCSEIC GKKLRCGNHK 360 CPAPCHRGLC APCPLTVKIS CQCGFTTLEV PCGADKDVKP PKCSKRCQRP QICGHGDLCK 420 PHRCHYGPCP PCQLLCNKKL DCGHSCNQRC HGPRLTCPVL KGTKKERKAV ISPIPGSPCP 480 PCSVLVSRPC MGKHPAGSRM VPCNDESRFS CEKPCGNLLS CGNHFCRDLC HVVTISRALS 540 NGTVVASGGA QQYDSCSSCR LKCTKTRDPP CPHPCEIGCH TGKCPACKVS LKKSCHCGTL 600 VRTLECSAFG CLSEDERIEL LSCKGPCHRK LENCSHLCSE ICHPGSCPSL CSKKVTTRCA 660 CQRIRKAYQC FEVQAAREKQ SALVPCDQDC LKAKASQELE EDLQHKQAAD KEVR

Sequence ? help Back to Top

Protein Sequence Length: 714 aa Download sequence Send to blast

ATKGGASTCL ICLEKIRKID PIWHCKQGCF AVLHLVCIQS WARQALSTSE NSSAGRNSSS  60
RTSPACWHCP KCRRDYPQAE IPREYRCYCG KEVDPRSDPW LTPHSCGERC ELELGLCSHT  120
CVLLCHPGPC PPCPQLVQLA CHCGKLAELR RCGHKSFSCQ RLCSKRLGCG VHSCDEICHE  180
GECKPCSKFG VHRCRCGSVT EVRPCSQADF QCERICDKEL SCKKHVCGKQ CHAGGCGECE  240
LQGRRTCACG KEAYKDLACD VKVPTCGSTC EKLLACGLHR CPERCHAGSC VGTCRVLINK  300
RCRCGSTAKE VPCYQDLVCE RKCQHIRNCQ RHACRRRCCD GDCPPCSEIC GKKLRCGNHK  360
CPAPCHRGLC APCPLTVKIS CQCGFTTLEV PCGADKDVKP PKCSKRCQRP QICGHGDLCK  420
PHRCHYGPCP PCQLLCNKKL DCGHSCNQRC HGPRLTCPVL KGTKKERKAV ISPIPGSPCP  480
PCSVLVSRPC MGKHPAGSRM VPCNDESRFS CEKPCGNLLS CGNHFCRDLC HVVTISRALS  540
NGTVVASGGA QQYDSCSSCR LKCTKTRDPP CPHPCEIGCH TGKCPACKVS LKKSCHCGTL  600
VRTLECSAFG CLSEDERIEL LSCKGPCHRK LENCSHLCSE ICHPGSCPSL CSKKVTTRCA  660
CQRIRKAYQC FEVQAAREKQ SALVPCDQDC LKAKASQELE EDLQHKQAAD KEVR

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. May mediate E2- or E3-dependent ubiquitination. Required to gate light sensitivity during the night. Regulates the speed of the clock by acting in the feedback loop between CCA1, LHY and APRR1/TOC1. Promotes the expression of CCA1 at night but not by days. This activational effect is enhanced by interaction with ADO1/ZTL. Association with ADO1/ZTL is not leading to the degradation of NFXL2. Confers sensitivity to osmotic stress such as high salinity. Prevents H(2)O(2) production and abscisic acid accumulation. Part of a regulatory network that integrates the biosynthesis and action of abscisic acid, reactive oxygen species and cuticle components. {ECO:0000269\|PubMed:16905136, ECO:0000269\|PubMed:21300918, ECO:0000269\|PubMed:21429190, ECO:0000269\|PubMed:22073231, ECO:0000269\|PubMed:22516817}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian-regulation with a peak of expression at or before dawn. Not regulated by biotic and abiotic stresses, by light and nutrient conditions or upon treatment with elicitors, chemicals, abscisic acid or phytohormones. {ECO:0000269\|PubMed:21300918, ECO:0000269\|PubMed:22073231}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002983191.2	0.0	NF-X1-type zinc finger protein NFXL2
Swissprot	Q9FFK8	0.0	NFXL2_ARATH; NF-X1-type zinc finger protein NFXL2
TrEMBL	D8SIN9	0.0	D8SIN9_SELML; Uncharacterized protein (Fragment)
STRING	EFJ15533	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP6325	17	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05660.1	0.0	sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	509
Entrez Gene	9654646

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]