PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 49951 | ||||||||
Common Name | SELMODRAFT_49949, SELMODRAFT_49951 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | ERF | ||||||||
Protein Properties | Length: 60aa MW: 7028.9 Da PI: 11.5982 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.5 | 2.2e-20 | 3 | 53 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GVr+++ +gr++AeIrdp++ + r +lg+f+taeeAa a++ a+++++g 49951 3 SEYRGVRRRP-WGRFAAEIRDPNT---KERRWLGTFDTAEEAALAYDVAARAMRG 53 56********.**********933...4999**********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.60E-25 | 3 | 60 | No hit | No description |
SuperFamily | SSF54171 | 5.56E-23 | 3 | 60 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 6.6E-29 | 4 | 60 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.629 | 4 | 60 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.5E-14 | 4 | 53 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 3.4E-31 | 4 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 5 | 16 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-10 | 27 | 43 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009733 | Biological Process | response to auxin | ||||
GO:0009880 | Biological Process | embryonic pattern specification | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0051726 | Biological Process | regulation of cell cycle | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 60 aa Download sequence Send to blast |
KNSEYRGVRR RPWGRFAAEI RDPNTKERRW LGTFDTAEEA ALAYDVAARA MRGIRARTNF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 6e-21 | 1 | 60 | 2 | 62 | ATERF1 |
3gcc_A | 6e-21 | 1 | 60 | 2 | 62 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for correct embryo patterning and cotyledon organogenesis. May regulate positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Involved in the cytokinin signaling pathway that promotes shoot regeneration, probably through transcriptional activation of target genes such as CUC1. Acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16339853, ECO:0000269|PubMed:17056621, ECO:0000269|PubMed:17376809}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024518605.1 | 3e-36 | ethylene-responsive transcription factor FZP-like | ||||
Swissprot | Q9FYK5 | 2e-29 | ESR2_ARATH; Ethylene-responsive transcription factor ESR2 | ||||
TrEMBL | D8SKF1 | 1e-34 | D8SKF1_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ09844 | 2e-35 | (Selaginella moellendorffii) | ||||
STRING | EFJ15216 | 2e-35 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24590.1 | 1e-21 | DORNROSCHEN-like |
Link Out ? help Back to Top | |
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Phytozome | 49951 |
Entrez Gene | 9628938 | 9643960 |