PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 48904 | ||||||||
Common Name | SELMODRAFT_48904 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | AP2 | ||||||||
Protein Properties | Length: 137aa MW: 15459.3 Da PI: 8.6486 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 44.4 | 4e-14 | 75 | 124 | 1 | 54 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkle 54 s+y+GV+ +k grW+A+ + +k+++lg f t+e+Aa+a++ a+ + + 48904 75 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFNTEEDAARAYDLAAVRCN 124 89********.7******5553..2.26*********************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 10.692 | 1 | 33 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.9E-4 | 3 | 39 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-7 | 4 | 34 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 2.0E-9 | 4 | 34 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.62E-18 | 75 | 135 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 5.75E-25 | 75 | 135 | No hit | No description |
Pfam | PF00847 | 1.1E-9 | 75 | 124 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 8.7E-28 | 76 | 137 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 15.778 | 76 | 133 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-17 | 76 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 77 | 88 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.3E-6 | 115 | 135 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 137 aa Download sequence Send to blast |
LFPGGFDTAH AAARAYDKAA IKFRGMDADI NFNLSDYQEE IKQASYTFFS LALLSREEFV 60 HILRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFNTEE DAARAYDLAA 120 VRCNGGEAVT NFDPSNY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition (Probable). Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes (PubMed:20713616). Prevents lemma and palea elongation as well as grain growth (PubMed:28066457). {ECO:0000250|UniProtKB:P47927, ECO:0000269|PubMed:20713616, ECO:0000269|PubMed:28066457, ECO:0000305|PubMed:26631749}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Target of miR172 microRNA mediated cleavage, particularly during floral organ development (Probable). Repressed by SRT1 via epigenetic histone H3K9 acetylation (H3K9ac) regulation (PubMed:27181944). {ECO:0000269|PubMed:27181944, ECO:0000305|PubMed:26631749, ECO:0000305|PubMed:28066457}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024527373.1 | 5e-76 | AP2-like ethylene-responsive transcription factor AIL5 isoform X1 | ||||
Refseq | XP_024528245.1 | 5e-76 | AP2-like ethylene-responsive transcription factor AIL5 isoform X1 | ||||
Swissprot | Q2TQ34 | 2e-62 | AP21_ORYSJ; APETALA2-like protein 1 | ||||
TrEMBL | D8QQ63 | 3e-97 | D8QQ63_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ38406 | 4e-98 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP497 | 17 | 84 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36920.2 | 1e-61 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | 48904 |
Entrez Gene | 9662927 |