PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 47768
Common NameSELMODRAFT_47768
Organism
Selaginella moellendorffii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
Family MYB
Protein Properties Length: 181aa    MW: 20116.8 Da    PI: 8.4864
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
47768genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.43.9e-09658346
                     SS-HHHHHHHHHHHHHTTTT..........-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg..........tWktIartmgkgRtlkqcksrwqk 46
                     +W+ e d+l+ +a + +  +          +W+++a+ ++ g+t+ +++ ++  
            47768  6 KWSSEQDKLFEKALAGWEDKcddpegvagsRWEAVAALVP-GKTAADVRAHYEL 58
                     7*****************99********************.**********975 PP
2Myb_DNA-binding42.51.5e-13114158347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT++E+ l++ + +++G+g+W++I+r +   Rt+ q+ s+ qky
            47768 114 PWTEDEHRLFLLGLEKFGKGDWRSISRNFVVSRTPTQVASHAQKY 158
                      7*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.191160IPR017877Myb-like domain
SMARTSM007172.8E-5362IPR001005SANT/Myb domain
SuperFamilySSF466892.66E-7667IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-4661IPR009057Homeodomain-like
CDDcd001671.34E-5660No hitNo description
PfamPF002492.6E-7657IPR001005SANT/Myb domain
PROSITE profilePS5129416.947106163IPR017930Myb domain
SuperFamilySSF466894.88E-17109164IPR009057Homeodomain-like
SMARTSM007171.1E-10111161IPR001005SANT/Myb domain
TIGRFAMsTIGR015574.1E-18111161IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.9E-11112157IPR009057Homeodomain-like
CDDcd001676.49E-10114159No hitNo description
PfamPF002492.9E-11114158IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
SPSAAKWSSE QDKLFEKALA GWEDKCDDPE GVAGSRWEAV AALVPGKTAA DVRAHYELLL  60
RDISSIEAGL IALPCYSPRD ALLVKDSSLA LDKKLGLPSS SCSSPDQERR KGIPWTEDEH  120
RLFLLGLEKF GKGDWRSISR NFVVSRTPTQ VASHAQKYFI RLNSIHKDKR RTSIHDITSV  180
N
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00500DAPTransfer from AT5G08520Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024519292.11e-119transcription factor SRM1
SwissprotQ9FNN61e-64SRM1_ARATH; Transcription factor SRM1
TrEMBLD8T2671e-129D8T267_SELML; Uncharacterized protein (Fragment)
STRINGEFJ092091e-130(Selaginella moellendorffii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP27517122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08520.19e-56MYB family protein
Publications ? help Back to Top
  1. Banks JA, et al.
    The Selaginella genome identifies genetic changes associated with the evolution of vascular plants.
    Science, 2011. 332(6032): p. 960-3
    [PMID:21551031]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]