PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 4727 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 205aa MW: 23632.8 Da PI: 9.934 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.9 | 7.3e-30 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien + rqvtfskRr g+lKKA+ELSvLCda+va+iifsstgkl+ey+s 4727 9 KRIENATSRQVTFSKRRGGLLKKAHELSVLCDAQVALIIFSSTGKLFEYAS 59 79***********************************************86 PP | |||||||
2 | K-box | 84.9 | 1.7e-28 | 83 | 173 | 9 | 99 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 +++++ + ++e+ +Lk+++e q++qRhllG+dL L lk+Lq+LeqqLe +l++iRs+K++++l++ie+l+++e +l++en++Lr++++ 4727 83 SQHHDSDYFSREVIRLKQQLERSQQTQRHLLGDDLAHLALKDLQSLEQQLELGLNRIRSRKEQVFLDEIEDLRRRELQLHKENEMLRRRVM 173 4566678999*****************************************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 32.87 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 3.6E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.19E-35 | 2 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.40E-47 | 2 | 75 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-31 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.8E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-31 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-31 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 5.7E-31 | 83 | 172 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.458 | 88 | 178 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:0090376 | Biological Process | seed trichome differentiation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
VGRGKIEIKR IENATSRQVT FSKRRGGLLK KAHELSVLCD AQVALIIFSS TGKLFEYAST 60 SMKEILDRYG KYPESVQGGN IASQHHDSDY FSREVIRLKQ QLERSQQTQR HLLGDDLAHL 120 ALKDLQSLEQ QLELGLNRIR SRKEQVFLDE IEDLRRRELQ LHKENEMLRR RVMQCPSNFV 180 NPLETREPPS FGNASLSLSS SRSQQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 4e-26 | 1 | 74 | 1 | 74 | MEF2C |
5f28_B | 4e-26 | 1 | 74 | 1 | 74 | MEF2C |
5f28_C | 4e-26 | 1 | 74 | 1 | 74 | MEF2C |
5f28_D | 4e-26 | 1 | 74 | 1 | 74 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024538443.1 | 1e-131 | MADS-box transcription factor 27 isoform X3 | ||||
Refseq | XP_024540272.1 | 1e-131 | MADS-box transcription factor 27 isoform X7 | ||||
Swissprot | Q6EP49 | 4e-57 | MAD27_ORYSJ; MADS-box transcription factor 27 | ||||
TrEMBL | D8S8B2 | 1e-127 | D8S8B2_SELML; MADS-domain transcription factor | ||||
STRING | EFJ19381 | 1e-128 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.1 | 2e-42 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | 4727 |
Publications ? help Back to Top | |||
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