PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 47266 | ||||||||
Common Name | SELMODRAFT_47266 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella
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Family | NAC | ||||||||
Protein Properties | Length: 223aa MW: 25102.6 Da PI: 9.6459 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 173.3 | 7.4e-54 | 9 | 134 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkk 104 lppGfrFhPtdeelvv+yL+++++++++ + +i+evd+yk++PwdLp k+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ s +g +vg+kk 47266 9 LPPGFRFHPTDEELVVHYLARRAASRPFAV-PIIAEVDLYKFDPWDLPDKALFGEREWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKPISS-DGCKVGVKK 110 79*************************999.88***************8777899**************************************9.999****** PP NAM 105 tLvfykgrapkgektdWvmheyrl 128 Lvfy+grapkg+kt+W+mheyrl 47266 111 ALVFYRGRAPKGSKTSWIMHEYRL 134 **********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.19E-67 | 4 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 61.871 | 9 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.4E-28 | 10 | 134 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
KKAVNSLQLP PGFRFHPTDE ELVVHYLARR AASRPFAVPI IAEVDLYKFD PWDLPDKALF 60 GEREWYFFSP RDRKYPNGAR PNRAAGSGYW KATGTDKPIS SDGCKVGVKK ALVFYRGRAP 120 KGSKTSWIMH EYRLADASGA SNRLSLRKKG SLRLDDWVLC RIYKKQSSDW KSPAASQEAP 180 SRENVKMDAD DESCLEEVLA SLPDIDDSKI CLPRLGSFTA MLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-86 | 4 | 168 | 15 | 171 | NAC domain-containing protein 19 |
3swm_B | 5e-86 | 4 | 168 | 15 | 171 | NAC domain-containing protein 19 |
3swm_C | 5e-86 | 4 | 168 | 15 | 171 | NAC domain-containing protein 19 |
3swm_D | 5e-86 | 4 | 168 | 15 | 171 | NAC domain-containing protein 19 |
3swp_A | 5e-86 | 4 | 168 | 15 | 171 | NAC domain-containing protein 19 |
3swp_B | 5e-86 | 4 | 168 | 15 | 171 | NAC domain-containing protein 19 |
3swp_C | 5e-86 | 4 | 168 | 15 | 171 | NAC domain-containing protein 19 |
3swp_D | 5e-86 | 4 | 168 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factors that bind specifically to the 5'-CATGTG-3' motif. {ECO:0000269|PubMed:15319476}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00012 | PBM | Transfer from AT1G52890 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Strongly induced by drought, high salinity and abscisic acid (ABA). Slightly up-regulated by cold treatment. Not induced by jasmonic acid. {ECO:0000269|PubMed:15319476, ECO:0000269|Ref.7}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002991033.2 | 1e-164 | NAC domain-containing protein 72 | ||||
Swissprot | Q93VY3 | 8e-89 | NAC72_ARATH; NAC domain-containing protein 72 | ||||
TrEMBL | D8T639 | 1e-162 | D8T639_SELML; Uncharacterized protein (Fragment) | ||||
STRING | EFJ07841 | 1e-163 | (Selaginella moellendorffii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G27410.2 | 2e-87 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | 47266 |
Entrez Gene | 9633766 |
Publications ? help Back to Top | |||
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