PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

444089

Common Name

SELMODRAFT_444089

Organism

Selaginella moellendorffii

Taxonomic ID

88036

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Lycopodiidae; Selaginellales; Selaginellaceae; Selaginella

Family

CO-like

Protein Properties

Length: 453aa MW: 49233.8 Da PI: 7.934

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
444089	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	24.7	4.8e-08	2	44	3	39
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 er C+ +++++++ +C+ + llC +C + H H++ 444089 2 ERPCDFCGDERATVYCKADAALLCLSCDRNVHDAnalsrrHSR 44 689***************************9943566666765 PP
2	CCT	61.3	3.1e-21	395	438	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R +a+lRYkeKrktRk+eK+irYesRK++A++R R+KGrFvk+ 444089 395 RGNAMLRYKEKRKTRKYEKRIRYESRKTRADTRRRIKGRFVKAG 438 7789*************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50119	10.352	1	47	IPR000315	B-box-type zinc finger
SMART	SM00336	1.3E-10	1	47	IPR000315	B-box-type zinc finger
Pfam	PF00643	7.7E-6	2	43	IPR000315	B-box-type zinc finger
CDD	cd00021	3.85E-8	3	47	No hit	No description
PROSITE profile	PS51017	15.09	395	437	IPR010402	CCT domain
Pfam	PF06203	1.2E-15	395	437	IPR010402	CCT domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005622	Cellular Component	intracellular
GO:0005886	Cellular Component	plasma membrane
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence Send to blast
MERPCDFCGD ERATVYCKAD AALLCLSCDR NVHDANALSR RHSRTLVCDM CVVQPAVVRC 60 GAESKAFCQA CDGKRHAEYR AMHHKRRAIV SYTGCPSSAE LARLWYCDVS DEPGGNGSGN 120 GSGKGSTSKC LETFQGWVPA SSQSQQQLHH PSTPQSREKK IFQQLMILQN RPPQQGLGHQ 180 QREKAITQAQ TLMPPPPPRP STSSSNGVAE IQYQTAQLGL HSPSSKPESG EIFPQQGENA 240 WKAASPDQQL WNNAQDMGID DICKALTADD VNVFDNYEDL FLSAQDAAGT PFQDIGIACP 300 SMAPAMSSKS MQNGCSSMDT ANSLQSDASE SACRGPFHPA AAAGNVQFSP RPACSSGVSG 360 DSSGTEYADC ASVFYSAGEL WSSTSSDPAA ASEARGNAML RYKEKRKTRK YEKRIRYESR 420 KTRADTRRRI KGRFVKAGQV YDYDPLSTTR SY*

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence Send to blast

MERPCDFCGD ERATVYCKAD AALLCLSCDR NVHDANALSR RHSRTLVCDM CVVQPAVVRC  60
GAESKAFCQA CDGKRHAEYR AMHHKRRAIV SYTGCPSSAE LARLWYCDVS DEPGGNGSGN  120
GSGKGSTSKC LETFQGWVPA SSQSQQQLHH PSTPQSREKK IFQQLMILQN RPPQQGLGHQ  180
QREKAITQAQ TLMPPPPPRP STSSSNGVAE IQYQTAQLGL HSPSSKPESG EIFPQQGENA  240
WKAASPDQQL WNNAQDMGID DICKALTADD VNVFDNYEDL FLSAQDAAGT PFQDIGIACP  300
SMAPAMSSKS MQNGCSSMDT ANSLQSDASE SACRGPFHPA AAAGNVQFSP RPACSSGVSG  360
DSSGTEYADC ASVFYSAGEL WSSTSSDPAA ASEARGNAML RYKEKRKTRK YEKRIRYESR  420
KTRADTRRRI KGRFVKAGQV YDYDPLSTTR SY*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002978965.1	0.0	zinc finger protein CONSTANS-LIKE 14
TrEMBL	D8S6D1	0.0	D8S6D1_SELML; Uncharacterized protein
STRING	EFJ19922	0.0	(Selaginella moellendorffii)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Representative plant	OGRP1375	13	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G48250.1	3e-37	B-box type zinc finger protein with CCT domain

Link Out ? help Back to Top
Phytozome	444089
Entrez Gene	9660122

Publications ? help Back to Top
Banks JA, et al. The Selaginella genome identifies genetic changes associated with the evolution of vascular plants. Science, 2011. 332(6032): p. 960-3 [PMID:21551031]